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The map label for this gene is ntrY [C]

Identifier: 15892871

GI number: 15892871

Start: 887403

End: 889202

Strand: Reverse

Name: ntrY [C]

Synonym: RC0948

Alternate gene names: 15892871

Gene position: 889202-887403 (Counterclockwise)

Preceding gene: 15892872

Following gene: 15892870

Centisome position: 70.08

GC content: 31.11

Gene sequence:

>1800_bases
ATGCTTAGTTATCTTAAACAAAATTTACATTCTTATTTTTCTAGTAGAGTACTAATTTTTACTTTAGCAACAGCAGCTAT
TATTTTTGCTTGTGCTACTTTTTATGTGATATCTTTAGAATCAAAGAATTTTAGTACGATTATTGGATTTTTATTAGTTG
ATTTAGCAATTTTTTTAATTTTAGGTGTTGTACTAACTCAAAAATTTTTTACTAAAAATAATAATAACGATAGTTCTAAA
TTACAAAATCGTATTGTAATTGCCTTTAGTTTAGTTGCAGCTATTCCAACTATAATTGTTTCGGTATTTTCTGTTTATTT
TTTTAATCTTAGTGTTCAAGCTTGGTTTGATAAGAAGATTTCTACGGTTCTTGATCAATCCGTGATAGTTGCAGAATCGT
ATATTGCCGAGCATAAATTACAGCTAAAAGAAACGGCTTTAGCCGTTGCTGAAGATTTAAGCGATATGTATTACGATTTA
ATTCACAATCCCGCTTTATTTACTAAAACACTTAATACTGAAGCAGAGATGCGTTCGCTTGATGAGGCTATAGTTTTAAA
CAAATCTACTAATACTATAGTAGCTAATAGTTATTTAAGTTTTTCATTATCATTTGCAACTATCCCTGCACATTTAATAA
AAAAAGCGGATTTAGGTGAACTGGTGGAAGTAAAATCCGATCCAACCAAAATAAGAATGCTGATTAAATTAAAAGAGTAT
AATGATGTGTATTTATTAGTTGGTAGATTAGTAGATAATAAAATTATCGACCATGTAGATGCAACTAATGGAGCAGCTGC
CGAGTATAATAGCCTTAAAAATGAAATAGATAATATACAGATTAAGTTCTCTATAATGTTTATCTTTATTGCCTTATTAC
TTCTTTTTGTAGCTATAAGTTTCGGGGTTATATTTACTGCTAAAATAGTAAAACCTATTAAAAAATTAGTTACTGCAACC
GATAACGTTAAAGATGGCGATTTAACGGTACAAGTGCCTGAAAATGAAGTAGATAAAGACGAAATAGGCACGCTTTATGT
GGCATTTAATAGAATGATTAAGCAGCTTTCTCGCCAGCAGCGTGATTTAGTTATAGCACAGAGGGCTATGGCTTGGTCGG
ATGTTGCAAAAAAAGTAGCCCATGAAATCAAGAATCCGTTAACTCCTATTTTACTTGCTTCTGAAAGATTGCTGAAGAAA
TTTAGCCCTGAAATTAAGGAAAGGGTAGAATTTGAAAATTATTTAAAAATGATTATTCGCCATACTAACGATATTAAAAA
TATAGTATCCGAATTTGTTCTTTTTGCACGTCTTCCTGCTCCTAAATTTACGAAGAGTGAATTAGTTTATTTAGTTAAAC
ATATTGTTGAAGCACGTAAATTACTTAATGATCATATTTTGTATAAATTTGAGTCTAACGTAGAACAATTTGATTTTATG
TGTGATGCTACCCAAATAAATCAAGTTATGATCAATTTATTGAAAAACGCAGAAGAGTCAATAGAAGGACGAGAATCAGG
GAAAATAGAAGTTACTATAGATGTTAAAGATGATTTTATTAGCGTTATTGTAACGGATAACGGTAAAGGATTCCCGCCTG
AGCTAATAGGCAAAGCTACCGAAAGCTATGTTACGACCAGCAGTAAAGGTATGGGAGTAGGGCTTGCTATAGTTAAAAGA
ATAGTCGAAGAACATTGCGGCATTCTAGATATAGCAAACAGAGAAGCAGAGGGAGCAATAATCGATATAAAATTTGATTT
AAAAGAATTGGATTTAAAGGCTAAGCGTTTGGAAATGTAG

Upstream 100 bases:

>100_bases
CTTTTGCAGCAATGACAATAAGACACTTAAAACTTGAAATATTTTCAATTAGCTTTTTTTTATGTTATAAAGAACTGTTA
TAGTCATATAAACAGTATCT

Downstream 100 bases:

>100_bases
TATTTTACTAGAGGATGCAGTTCTTAAAGAAAATTTAGAATCAATTATTTATCACCTAATATGAACACAAATCATAAACA
AAAAGCAAAGTTATGAATGT

Product: nitrogen regulation protein ntrY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 599; Mature: 599

Protein sequence:

>599_residues
MLSYLKQNLHSYFSSRVLIFTLATAAIIFACATFYVISLESKNFSTIIGFLLVDLAIFLILGVVLTQKFFTKNNNNDSSK
LQNRIVIAFSLVAAIPTIIVSVFSVYFFNLSVQAWFDKKISTVLDQSVIVAESYIAEHKLQLKETALAVAEDLSDMYYDL
IHNPALFTKTLNTEAEMRSLDEAIVLNKSTNTIVANSYLSFSLSFATIPAHLIKKADLGELVEVKSDPTKIRMLIKLKEY
NDVYLLVGRLVDNKIIDHVDATNGAAAEYNSLKNEIDNIQIKFSIMFIFIALLLLFVAISFGVIFTAKIVKPIKKLVTAT
DNVKDGDLTVQVPENEVDKDEIGTLYVAFNRMIKQLSRQQRDLVIAQRAMAWSDVAKKVAHEIKNPLTPILLASERLLKK
FSPEIKERVEFENYLKMIIRHTNDIKNIVSEFVLFARLPAPKFTKSELVYLVKHIVEARKLLNDHILYKFESNVEQFDFM
CDATQINQVMINLLKNAEESIEGRESGKIEVTIDVKDDFISVIVTDNGKGFPPELIGKATESYVTTSSKGMGVGLAIVKR
IVEEHCGILDIANREAEGAIIDIKFDLKELDLKAKRLEM

Sequences:

>Translated_599_residues
MLSYLKQNLHSYFSSRVLIFTLATAAIIFACATFYVISLESKNFSTIIGFLLVDLAIFLILGVVLTQKFFTKNNNNDSSK
LQNRIVIAFSLVAAIPTIIVSVFSVYFFNLSVQAWFDKKISTVLDQSVIVAESYIAEHKLQLKETALAVAEDLSDMYYDL
IHNPALFTKTLNTEAEMRSLDEAIVLNKSTNTIVANSYLSFSLSFATIPAHLIKKADLGELVEVKSDPTKIRMLIKLKEY
NDVYLLVGRLVDNKIIDHVDATNGAAAEYNSLKNEIDNIQIKFSIMFIFIALLLLFVAISFGVIFTAKIVKPIKKLVTAT
DNVKDGDLTVQVPENEVDKDEIGTLYVAFNRMIKQLSRQQRDLVIAQRAMAWSDVAKKVAHEIKNPLTPILLASERLLKK
FSPEIKERVEFENYLKMIIRHTNDIKNIVSEFVLFARLPAPKFTKSELVYLVKHIVEARKLLNDHILYKFESNVEQFDFM
CDATQINQVMINLLKNAEESIEGRESGKIEVTIDVKDDFISVIVTDNGKGFPPELIGKATESYVTTSSKGMGVGLAIVKR
IVEEHCGILDIANREAEGAIIDIKFDLKELDLKAKRLEM
>Mature_599_residues
MLSYLKQNLHSYFSSRVLIFTLATAAIIFACATFYVISLESKNFSTIIGFLLVDLAIFLILGVVLTQKFFTKNNNNDSSK
LQNRIVIAFSLVAAIPTIIVSVFSVYFFNLSVQAWFDKKISTVLDQSVIVAESYIAEHKLQLKETALAVAEDLSDMYYDL
IHNPALFTKTLNTEAEMRSLDEAIVLNKSTNTIVANSYLSFSLSFATIPAHLIKKADLGELVEVKSDPTKIRMLIKLKEY
NDVYLLVGRLVDNKIIDHVDATNGAAAEYNSLKNEIDNIQIKFSIMFIFIALLLLFVAISFGVIFTAKIVKPIKKLVTAT
DNVKDGDLTVQVPENEVDKDEIGTLYVAFNRMIKQLSRQQRDLVIAQRAMAWSDVAKKVAHEIKNPLTPILLASERLLKK
FSPEIKERVEFENYLKMIIRHTNDIKNIVSEFVLFARLPAPKFTKSELVYLVKHIVEARKLLNDHILYKFESNVEQFDFM
CDATQINQVMINLLKNAEESIEGRESGKIEVTIDVKDDFISVIVTDNGKGFPPELIGKATESYVTTSSKGMGVGLAIVKR
IVEEHCGILDIANREAEGAIIDIKFDLKELDLKAKRLEM

Specific function: Member of the two-component regulatory system RC0948/RC0849

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain

Homologues:

Organism=Escherichia coli, GI1790436, Length=235, Percent_Identity=27.2340425531915, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788549, Length=226, Percent_Identity=27.4336283185841, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1790300, Length=238, Percent_Identity=27.3109243697479, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NTRYL_RICCN (Q92H24)

Other databases:

- EMBL:   AE006914
- PIR:   D97818
- RefSeq:   NP_360585.1
- ProteinModelPortal:   Q92H24
- SMR:   Q92H24
- GeneID:   927770
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC0948
- NMPDR:   fig|272944.1.peg.948
- OMA:   FARMPEP
- ProtClustDB:   CLSK871014
- BioCyc:   RCON272944:RC0948-MONOMER
- BRENDA:   2.7.13.3
- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- Gene3D:   G3DSA:3.30.565.10
- PRINTS:   PR00344
- SMART:   SM00304
- SMART:   SM00387
- SMART:   SM00388

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; SSF55874 ATP_bd_ATPase; SSF47384 His_kin_homodim

EC number: =2.7.13.3

Molecular weight: Translated: 67494; Mature: 67494

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50885 HAMP; PS50109 HIS_KIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xcf41f50)-; HASH(0xc326404)-; HASH(0xd142b2c)-; HASH(0xd9d4624)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSYLKQNLHSYFSSRVLIFTLATAAIIFACATFYVISLESKNFSTIIGFLLVDLAIFLI
CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
LGVVLTQKFFTKNNNNDSSKLQNRIVIAFSLVAAIPTIIVSVFSVYFFNLSVQAWFDKKI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
STVLDQSVIVAESYIAEHKLQLKETALAVAEDLSDMYYDLIHNPALFTKTLNTEAEMRSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHHHHHHC
DEAIVLNKSTNTIVANSYLSFSLSFATIPAHLIKKADLGELVEVKSDPTKIRMLIKLKEY
CHHHEEECCCCEEEEECHHEEEEHHHHHHHHHHCCCCCHHHHHCCCCCHHEEEEEEEECC
NDVYLLVGRLVDNKIIDHVDATNGAAAEYNSLKNEIDNIQIKFSIMFIFIALLLLFVAIS
CCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHH
FGVIFTAKIVKPIKKLVTATDNVKDGDLTVQVPENEVDKDEIGTLYVAFNRMIKQLSRQQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RDLVIAQRAMAWSDVAKKVAHEIKNPLTPILLASERLLKKFSPEIKERVEFENYLKMIIR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
HTNDIKNIVSEFVLFARLPAPKFTKSELVYLVKHIVEARKLLNDHILYKFESNVEQFDFM
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHH
CDATQINQVMINLLKNAEESIEGRESGKIEVTIDVKDDFISVIVTDNGKGFPPELIGKAT
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHH
ESYVTTSSKGMGVGLAIVKRIVEEHCGILDIANREAEGAIIDIKFDLKELDLKAKRLEM
HHHEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEECHHHHCCHHHHCCH
>Mature Secondary Structure
MLSYLKQNLHSYFSSRVLIFTLATAAIIFACATFYVISLESKNFSTIIGFLLVDLAIFLI
CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
LGVVLTQKFFTKNNNNDSSKLQNRIVIAFSLVAAIPTIIVSVFSVYFFNLSVQAWFDKKI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
STVLDQSVIVAESYIAEHKLQLKETALAVAEDLSDMYYDLIHNPALFTKTLNTEAEMRSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHHHHHHC
DEAIVLNKSTNTIVANSYLSFSLSFATIPAHLIKKADLGELVEVKSDPTKIRMLIKLKEY
CHHHEEECCCCEEEEECHHEEEEHHHHHHHHHHCCCCCHHHHHCCCCCHHEEEEEEEECC
NDVYLLVGRLVDNKIIDHVDATNGAAAEYNSLKNEIDNIQIKFSIMFIFIALLLLFVAIS
CCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHH
FGVIFTAKIVKPIKKLVTATDNVKDGDLTVQVPENEVDKDEIGTLYVAFNRMIKQLSRQQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RDLVIAQRAMAWSDVAKKVAHEIKNPLTPILLASERLLKKFSPEIKERVEFENYLKMIIR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
HTNDIKNIVSEFVLFARLPAPKFTKSELVYLVKHIVEARKLLNDHILYKFESNVEQFDFM
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHH
CDATQINQVMINLLKNAEESIEGRESGKIEVTIDVKDDFISVIVTDNGKGFPPELIGKAT
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHH
ESYVTTSSKGMGVGLAIVKRIVEEHCGILDIANREAEGAIIDIKFDLKELDLKAKRLEM
HHHEEECCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEECHHHHCCHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11557893