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The map label for this gene is rpsU

Identifier: 15892872

GI number: 15892872

Start: 889568

End: 889768

Strand: Reverse

Name: rpsU

Synonym: RC0949

Alternate gene names: 15892872

Gene position: 889768-889568 (Counterclockwise)

Preceding gene: 15892881

Following gene: 15892871

Centisome position: 70.13

GC content: 33.83

Gene sequence:

>201_bases
GTGATACTAGTAAATGTTCACGCCGGTAATTGTGATAATACGCTTAAGAATTTTAAGAAAAAGCTACAAAGAGAGCTTTA
TTTTCGTAAGATGAAAGAACAGCGTTATTATGAAACACCTTCAGCGAAGCGTGTTCGTAAAGTACAAGAAGCAGCAAGAA
GACAGAGAAAATTTGCTCGTAAAAAAATGTTTGATGAATAA

Upstream 100 bases:

>100_bases
GGTGTTCTTCTTGAATGCTCATATTTTTAACCTTGACATATAACTGAATTATAGGGTATAGTTCAATAAACCACAATATC
TTTTAAGGAGAGTAATTTTA

Downstream 100 bases:

>100_bases
AATTTCAAACAATTTTCATACTAAATATAAAGCTAGAAATATTAATATTTCTAGCTTTTTTTATTGTCATCTAGTTGCTT
GACCATGTGTTGTACGAACG

Product: 30S ribosomal protein S21

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MILVNVHAGNCDNTLKNFKKKLQRELYFRKMKEQRYYETPSAKRVRKVQEAARRQRKFARKKMFDE

Sequences:

>Translated_66_residues
MILVNVHAGNCDNTLKNFKKKLQRELYFRKMKEQRYYETPSAKRVRKVQEAARRQRKFARKKMFDE
>Mature_66_residues
MILVNVHAGNCDNTLKNFKKKLQRELYFRKMKEQRYYETPSAKRVRKVQEAARRQRKFARKKMFDE

Specific function: Unknown

COG id: COG0828

COG function: function code J; Ribosomal protein S21

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S21P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS21_RICAE (C3PP58)

Other databases:

- EMBL:   CP001612
- RefSeq:   YP_002845461.1
- ProteinModelPortal:   C3PP58
- SMR:   C3PP58
- GeneID:   7815256
- GenomeReviews:   CP001612_GR
- KEGG:   raf:RAF_ORF0857
- OMA:   REMKERR
- ProtClustDB:   PRK00270
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00358
- InterPro:   IPR001911
- ProDom:   PD005521
- TIGRFAMs:   TIGR00030

Pfam domain/function: PF01165 Ribosomal_S21

EC number: NA

Molecular weight: Translated: 8152; Mature: 8152

Theoretical pI: Translated: 11.19; Mature: 11.19

Prosite motif: PS01181 RIBOSOMAL_S21

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILVNVHAGNCDNTLKNFKKKLQRELYFRKMKEQRYYETPSAKRVRKVQEAARRQRKFAR
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KKMFDE
HHCCCC
>Mature Secondary Structure
MILVNVHAGNCDNTLKNFKKKLQRELYFRKMKEQRYYETPSAKRVRKVQEAARRQRKFAR
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KKMFDE
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA