| Definition | Rickettsia conorii str. Malish 7, complete genome. |
|---|---|
| Accession | NC_003103 |
| Length | 1,268,755 |
Click here to switch to the map view.
The map label for this gene is recG [H]
Identifier: 15892824
GI number: 15892824
Start: 847167
End: 849308
Strand: Reverse
Name: recG [H]
Synonym: RC0901
Alternate gene names: 15892824
Gene position: 849308-847167 (Counterclockwise)
Preceding gene: 15892825
Following gene: 15892814
Centisome position: 66.94
GC content: 34.45
Gene sequence:
>2142_bases ATGCTAACTATTTTAGAAAAATTCTTATTCTCTTCTGTAAAAACGTTCATCAATATACGTGAAGATACCGTATCTGCTCT TAAAAGGCTTGGTATTAAAAATATTCGTGATTTATTATTTTATCTACCTGTTTCATATCAAAATAAAATATTATCGCCTA ATTTAACTGAAGTTAGAGACGGTGACATAATCCAAACAGAAATTGTAGTTGAGAGCATTAATTTACCAAAGAAAAGTAGT CAGCCTTTAAAAATTACAGCTAGCAATGATACTGGTTCTTTGTTATTAGTGTTTTTTCATAAACCCCCACCGTTTATTTT TAATAAGCTGCAAGTTGGTACTTCTCATATTATCAGCGGAAAGGTACAATTTTTTGATCATTACTTACAAATTGCGCATC CTGAATTTATTGTAAATCCTAAACTTGCAAAAGAAATAGAGCCGATTTATTCCCTGACATATTTACTTAGTAACAAGCAG TTATATTCATATATCATAAAAGCAATAGAGATATTTGAAGAGAAGTGTAAGAGTATAGAAGATAAAGAAGTAAAAGATTA TTTAGATATTATATTGCAGAATTTGCAAATGTTGCATGTTTTCCATCATTGCGAGGAGGCATGCATGCCGACGAAGCAAT CCAGTAATGTAAAATTAATAAATTCTAGATTGCCGCAGCCCCTAAAGGGGCTTCACAATGACGATTTATATACTAACGCC AAAAAACAACTAGCAGCTAAGGAGCTTATCGCTAATCAAATATCTCTTTTAAATGTACGTACGCAAATAAGTAGAAGACA AGGTAATATTTACCCTAAAGCTGTATCTATTCAAGCAAATATATTAAATGAGCTAGGATTTGAGTTAACCTCTTATCAAA AGCAAGTCATAGAAGAAATAGAGTGTGATCAAAGCGATAAAATAGAAATGATGAGATTGTTGCAAGGCGATGTTGGCTCC GGTAAAACTTTGGTAGCTCTGCTGACGATGGTAAATGTGGTAGCCACTGGATTTCAAGCAACGCTTATGGCTCCAACTGA TTTGCTTGCCAATCAGCATTATGAGTTTTTTGTTAAAGCTTTAAAAAATACTAATATAAGAGTCGGATTACTTACAGGTA AGATACTGGGGACAGCTCGTAAAAATATTATGATACAACTTGACAACGATGAGATTGATATATTAGTCGGCACTCATGCT TTATTTCAAGAAAAAGTAAGTTTTAAGAAATTAGGTTATATAGTTATTGATGAGCAGCATAGATTTGGGGTACAACAGCG TTTGAATTTAATAAATAAAGGAGTAAATCCCGATGTGTTAGTTATGACTGCAACGCCGATTCCTCGCAGTCTTGCACTTA CTATGTTTGGTGATATGACTATCTCAAAGTTAATGGGTAAGCCGAAAAGTCGTTTACCTATCGCTACAAATACCATGTCC GTTAATAAGATAGAGCATATTATAGTAGCGATAAATAAGAAGCTTATTGCAGGTGAGCGGGTATATTGGATTTGTCCATT GATAGAGCAGGGAGAGAAAGAAACGTCGGAAGAGGATAGTTTATTGATGGATGTGATGAATCGTTTTAACTCTATCGACA ATATCTATCAAGGTTATACCGGTATTATTCACGGTAAGATGAAGAACGAGCAGAAAGACCAAATAATGAAGCAATTTAAG GAAGGTGAAATTAAGATATTAGTTGCAACAACCGTTATTGAAGTCGGAATAGACATACCTGAAGCCACTTTGATAATTAT TGAAAATGCTGAGCAATTTGGTCTCGCTCAACTTCATCAGCTTAGAGGTAGAGTAGGGCGGGGTAGTTTGCAGTCATATT GTATATTGTTATACAATCCTAAAAGGCTTAGAAAAGTTGCACGAGGTAGGTTTGAGATAATGAAACAAACTAATGATGGA TTTTATATAGCTGAGCAGGATTTAAAACTTCGAGGTAGCGGTGAGATTTTAGGAGTAAAACAAAGCGGCGAAATCGCATT TTTCTTCGCCAATTTAGCGGACGATTATGACCTACTTCTTAAAGCGCATAAATTTGCAGCAATAGGCTCAAAAGGTAATG TAAATTTTGTTAACTTTCAGATCAAGCTCTTTGCCAAATCTCAAGTAAGCGAGTTGGTTTAG
Upstream 100 bases:
>100_bases CTTTTGCAAGAATGACATATTAATCATAATTTGTATATTTTATTATTCTTCTTTTATTATAAAGTATATATATTTGTATA TAAGATAATTATGACTATAT
Downstream 100 bases:
>100_bases TTTGAATATGCTATTTCCGCTTGACATTGGCGTTGTTGCGTGGATCGATTTTTCCGTCATTGTGAGAAGAATGACGCAGT AATTCGATAAAGCAATCTCG
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MLTILEKFLFSSVKTFINIREDTVSALKRLGIKNIRDLLFYLPVSYQNKILSPNLTEVRDGDIIQTEIVVESINLPKKSS QPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFIVNPKLAKEIEPIYSLTYLLSNKQ LYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKLINSRLPQPLKGLHNDDLYTNA KKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGS GKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIMIQLDNDEIDILVGTHA LFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNTMS VNKIEHIIVAINKKLIAGERVYWICPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFK EGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDG FYIAEQDLKLRGSGEILGVKQSGEIAFFFANLADDYDLLLKAHKFAAIGSKGNVNFVNFQIKLFAKSQVSELV
Sequences:
>Translated_713_residues MLTILEKFLFSSVKTFINIREDTVSALKRLGIKNIRDLLFYLPVSYQNKILSPNLTEVRDGDIIQTEIVVESINLPKKSS QPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFIVNPKLAKEIEPIYSLTYLLSNKQ LYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKLINSRLPQPLKGLHNDDLYTNA KKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGS GKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIMIQLDNDEIDILVGTHA LFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNTMS VNKIEHIIVAINKKLIAGERVYWICPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFK EGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDG FYIAEQDLKLRGSGEILGVKQSGEIAFFFANLADDYDLLLKAHKFAAIGSKGNVNFVNFQIKLFAKSQVSELV >Mature_713_residues MLTILEKFLFSSVKTFINIREDTVSALKRLGIKNIRDLLFYLPVSYQNKILSPNLTEVRDGDIIQTEIVVESINLPKKSS QPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISGKVQFFDHYLQIAHPEFIVNPKLAKEIEPIYSLTYLLSNKQ LYSYIIKAIEIFEEKCKSIEDKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKLINSRLPQPLKGLHNDDLYTNA KKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIEEIECDQSDKIEMMRLLQGDVGS GKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFVKALKNTNIRVGLLTGKILGTARKNIMIQLDNDEIDILVGTHA LFQEKVSFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNTMS VNKIEHIIVAINKKLIAGERVYWICPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQGYTGIIHGKMKNEQKDQIMKQFK EGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQLHQLRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDG FYIAEQDLKLRGSGEILGVKQSGEIAFFFANLADDYDLLLKAHKFAAIGSKGNVNFVNFQIKLFAKSQVSELV
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=680, Percent_Identity=35.2941176470588, Blast_Score=379, Evalue=1e-106, Organism=Escherichia coli, GI1787357, Length=445, Percent_Identity=35.0561797752809, Blast_Score=252, Evalue=6e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 80647; Mature: 80647
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: PS00435 PEROXIDASE_1 ; PS00387 PPASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTILEKFLFSSVKTFINIREDTVSALKRLGIKNIRDLLFYLPVSYQNKILSPNLTEVRD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GDIIQTEIVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISG CCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHCCCHHHHCC KVQFFDHYLQIAHPEFIVNPKLAKEIEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKSIE HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC DKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKLINSRLPQPLKGLHNDDLYTNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCCHHHHCCCCCCCHHHH KKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIEEI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHH ECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFVKA CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCHHHHHHHH LKNTNIRVGLLTGKILGTARKNIMIQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDEQH HCCCCEEEEEEECHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHCCEEEEECHH RFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNTMS HCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC VNKIEHIIVAINKKLIAGERVYWICPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQGYT HHHHHHEEEEECCCEECCCEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC GIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQLHQ EEEECCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHH LRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVK HHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCEEEEE QSGEIAFFFANLADDYDLLLKAHKFAAIGSKGNVNFVNFQIKLFAKSQVSELV CCCCEEEEEECCCCCHHHHHHHHHHHEECCCCCEEEEEEEEEEEEHHHHHHCC >Mature Secondary Structure MLTILEKFLFSSVKTFINIREDTVSALKRLGIKNIRDLLFYLPVSYQNKILSPNLTEVRD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC GDIIQTEIVVESINLPKKSSQPLKITASNDTGSLLLVFFHKPPPFIFNKLQVGTSHIISG CCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHCCCHHHHCC KVQFFDHYLQIAHPEFIVNPKLAKEIEPIYSLTYLLSNKQLYSYIIKAIEIFEEKCKSIE HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC DKEVKDYLDIILQNLQMLHVFHHCEEACMPTKQSSNVKLINSRLPQPLKGLHNDDLYTNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCCHHHHCCCCCCCHHHH KKQLAAKELIANQISLLNVRTQISRRQGNIYPKAVSIQANILNELGFELTSYQKQVIEEI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHH ECDQSDKIEMMRLLQGDVGSGKTLVALLTMVNVVATGFQATLMAPTDLLANQHYEFFVKA CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCHHHHHHHH LKNTNIRVGLLTGKILGTARKNIMIQLDNDEIDILVGTHALFQEKVSFKKLGYIVIDEQH HCCCCEEEEEEECHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHCCEEEEECHH RFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMFGDMTISKLMGKPKSRLPIATNTMS HCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC VNKIEHIIVAINKKLIAGERVYWICPLIEQGEKETSEEDSLLMDVMNRFNSIDNIYQGYT HHHHHHEEEEECCCEECCCEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC GIIHGKMKNEQKDQIMKQFKEGEIKILVATTVIEVGIDIPEATLIIIENAEQFGLAQLHQ EEEECCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHH LRGRVGRGSLQSYCILLYNPKRLRKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEILGVK HHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCEEEEE QSGEIAFFFANLADDYDLLLKAHKFAAIGSKGNVNFVNFQIKLFAKSQVSELV CCCCEEEEEECCCCCHHHHHHHHHHHEECCCCCEEEEEEEEEEEEHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9534248; 9384377 [H]