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The map label for this gene is 15892473

Identifier: 15892473

GI number: 15892473

Start: 540798

End: 543314

Strand: Reverse

Name: 15892473

Synonym: RC0550

Alternate gene names: NA

Gene position: 543314-540798 (Counterclockwise)

Preceding gene: 15892475

Following gene: 15892465

Centisome position: 42.82

GC content: 28.68

Gene sequence:

>2517_bases
ATGACTGCTGATTATTCTTTTTTGAAAAGTTTTGCTGAGTATATCATTGATAAATTAGGTAAAGATACAAAAGTTCAAAT
AATATTGCCTAATAATTTCTCATGCCTAGAATTAAAGAAGATTTTAACCGATAAATATAAAATTAAATTACCTATCATTA
TTCCTTTTAATTCTCTTATTTCAAAAAAAATCGATTCGGATTATATATCTAAAATAGAAGAATTACTTATTTTATCATCA
ATTATCACCGAATATAAAGAATTACCTTTGAATAAAAATGAATCATTAAAAGCTGCAGAACTTTTAAGAAAATTGTTTAA
TGATCTTATAATCAATAATATCGATATAAAATTAATTGAAGTCTATAACAATTCTAACTATTGGCAAAAGATTTATAAAT
TTCTAGAATATTGCTTTTTAAGATGGCAAGAAGAAATATCGTTTACTCAAAAACAAACTAAAGCAGTTTATAAATTAAAG
CTATTACAAGAAGAAATAATAAAAATAAAAACAGGACATAAGCAGGTAATACTCGCCGGAATATTCAAGCCTAATGTTTT
TTTTAAAAGATTTGAAGAAGAATTAAAGGATTACATAATTCACTATAATCCTGCCTCCAAGCAGATTAGCGATGGTATAT
CTTATTATGAACCTAATGACATTTATGAAGAAACTAAACAAATATCTTATATATGTAGCCGTAATAAAGACAGACGGATT
GCAATCGTTACAAATAATAATAAGCTTAAAAGAGTATATTGTAATTTTTTAGACAAATATGAAGATCTACTAGGTAATGA
CTTAAGGCTTACTAATATAGGTGAATTACTAACGTCCATTATTAAAATATTATGTAATAATTTTGATTTAAAACTTCTAT
TTTTATTACTTAAAAATCCTTTAATTAACTGCCCTACTGTGCAGCAGTTAGAGTTAATGCTATCTAATAAAAACCGTTTT
ATATCCTCACCGAAATATTTATTGCAATTACAATTTGATAATGAGGATATAAGAGAGTATTGCCGTAACTTAATAGATAT
TTTATTTACCGATACTCCACACAATATACAAGCTATTCTAACCTTAACTAAAGAAATAACTGAAAAACTTTTGCCTACTA
TTTGGGAAAAAGAAGGAGGAGCAGAACTACTTGAGTTTTTAACAAATTTAACTGCATATAGTAAATATATAAATTCAACG
GATAAAAAGGATTTTCCTAAAATTTTTTCTTTTTTACTTTCTAATATCAAGTATTACAAAAATACCGACGCTGCTAGTAT
TATTATAGGACGGCCTGAAGATTTAGCATTATGTGAATTTGACTTAATTATATTACCGCATTTTAATAATGAAAACTGGA
CACTTAGTGCTAAAGCTCACCCATGGCTTAGCAAGCAAGCATTGCAGATACTAAATATAGATTACGATGAAATTGCCCCT
ACTCTATATTCAGATTACTTCAATTTATTTCTACAAAATAAGCAAATAGTTATACTGAATGCTAAAAAATATGATGGGAA
ACTGTCAGTGCCGAGTAATTTATTTTTGAAGCTAGAAAAAGGTTCTGTGTCACCCCGTGACTTGATCACGGGGTCCAGTA
ATTATATGGATACCGTGGTCAAGCCACGGTATGACAAGAGTATTGAGATCCACAGCCCCTCTTTCCCAACCACCTTATCA
GTAACCGAAATAGAAACATTAATAAAAAACCCATACGGTTTTTATGCTAAGAAAATTCTTGGACTACGTAAAAAAGATCA
TATATGGGAAGAACCTAAAATATCGGATTTCGGTAATTTGATTCATAAAGTTTTAGAGGAATATTCTAAAAATTACGACA
AACAATATATTAATTTAAATTTGCTTGATAAACAAAATGCTTTAATAAATATCGGTAATCATATTTTATATAGCACTATT
TTACCAAGCTACACAAAAAAAACTTGGCAAATAAAACTCACGGCTTTCAGCAAAGCTTTTATTTTATTTGATATAGAACG
CCGAAAAAACTGCAAAGAAATCTATTTTGAAACCAAAGGGGAGTTACGGCTAAATATTGTAGGTCAAGATATAAAAATAA
TCGGTATAGCTGACCGAATTGAAATAAGTAAATCAAACAATATCACTATACTAGATTATAAGACCGGTACTATTCCGACT
AAGAAAGAAATAGAGCTTGGACTCTCTCCGCAACTTATCATAGAAAGTTTGATGTTACTAGAAAACGGATTTACGAAATG
TAATTCTCTGTCCCTTTTATGTCATCCCCAGCCCCTTTTGTGTTATTCCCGCGAAAGCAGGAATCCAGTTATAAATAACA
ATATTACTATCGCCTACGTAAAAATAACTAGTACCGAACCTTATGTGCACACAACGGAAATAACTTTAAGCATTGAGACT
TTAAATAGACATAAAGCAGGATTAGTAAAATTACTTGAACATTATATTACAAATCAATTCTTTTCTTATGATTTGAATTT
ATCAAAGTATAATGATTATTTGCATTTGAGTCGATAG

Upstream 100 bases:

>100_bases
TAAAAAACTAATAATCAAATATTATTTATTGTACTATATTATCATTTTAAATAAGATTTCGGACCTTTGATCTGCTATAT
TATCGTCAAAAACATTATTT

Downstream 100 bases:

>100_bases
GCTAATTATGTCATTCCCGCATAGGCAGGAATCCAGTACTTTAAAACTTTTTTTAAAGCTCGATTTATCTCGCTTTACCC
TAGGATTCCCGCCTACGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 838; Mature: 837

Protein sequence:

>838_residues
MTADYSFLKSFAEYIIDKLGKDTKVQIILPNNFSCLELKKILTDKYKIKLPIIIPFNSLISKKIDSDYISKIEELLILSS
IITEYKELPLNKNESLKAAELLRKLFNDLIINNIDIKLIEVYNNSNYWQKIYKFLEYCFLRWQEEISFTQKQTKAVYKLK
LLQEEIIKIKTGHKQVILAGIFKPNVFFKRFEEELKDYIIHYNPASKQISDGISYYEPNDIYEETKQISYICSRNKDRRI
AIVTNNNKLKRVYCNFLDKYEDLLGNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCPTVQQLELMLSNKNRF
ISSPKYLLQLQFDNEDIREYCRNLIDILFTDTPHNIQAILTLTKEITEKLLPTIWEKEGGAELLEFLTNLTAYSKYINST
DKKDFPKIFSFLLSNIKYYKNTDAASIIIGRPEDLALCEFDLIILPHFNNENWTLSAKAHPWLSKQALQILNIDYDEIAP
TLYSDYFNLFLQNKQIVILNAKKYDGKLSVPSNLFLKLEKGSVSPRDLITGSSNYMDTVVKPRYDKSIEIHSPSFPTTLS
VTEIETLIKNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYINLNLLDKQNALINIGNHILYSTI
LPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFETKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPT
KKEIELGLSPQLIIESLMLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITSTEPYVHTTEITLSIET
LNRHKAGLVKLLEHYITNQFFSYDLNLSKYNDYLHLSR

Sequences:

>Translated_838_residues
MTADYSFLKSFAEYIIDKLGKDTKVQIILPNNFSCLELKKILTDKYKIKLPIIIPFNSLISKKIDSDYISKIEELLILSS
IITEYKELPLNKNESLKAAELLRKLFNDLIINNIDIKLIEVYNNSNYWQKIYKFLEYCFLRWQEEISFTQKQTKAVYKLK
LLQEEIIKIKTGHKQVILAGIFKPNVFFKRFEEELKDYIIHYNPASKQISDGISYYEPNDIYEETKQISYICSRNKDRRI
AIVTNNNKLKRVYCNFLDKYEDLLGNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCPTVQQLELMLSNKNRF
ISSPKYLLQLQFDNEDIREYCRNLIDILFTDTPHNIQAILTLTKEITEKLLPTIWEKEGGAELLEFLTNLTAYSKYINST
DKKDFPKIFSFLLSNIKYYKNTDAASIIIGRPEDLALCEFDLIILPHFNNENWTLSAKAHPWLSKQALQILNIDYDEIAP
TLYSDYFNLFLQNKQIVILNAKKYDGKLSVPSNLFLKLEKGSVSPRDLITGSSNYMDTVVKPRYDKSIEIHSPSFPTTLS
VTEIETLIKNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYINLNLLDKQNALINIGNHILYSTI
LPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFETKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPT
KKEIELGLSPQLIIESLMLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITSTEPYVHTTEITLSIET
LNRHKAGLVKLLEHYITNQFFSYDLNLSKYNDYLHLSR
>Mature_837_residues
TADYSFLKSFAEYIIDKLGKDTKVQIILPNNFSCLELKKILTDKYKIKLPIIIPFNSLISKKIDSDYISKIEELLILSSI
ITEYKELPLNKNESLKAAELLRKLFNDLIINNIDIKLIEVYNNSNYWQKIYKFLEYCFLRWQEEISFTQKQTKAVYKLKL
LQEEIIKIKTGHKQVILAGIFKPNVFFKRFEEELKDYIIHYNPASKQISDGISYYEPNDIYEETKQISYICSRNKDRRIA
IVTNNNKLKRVYCNFLDKYEDLLGNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCPTVQQLELMLSNKNRFI
SSPKYLLQLQFDNEDIREYCRNLIDILFTDTPHNIQAILTLTKEITEKLLPTIWEKEGGAELLEFLTNLTAYSKYINSTD
KKDFPKIFSFLLSNIKYYKNTDAASIIIGRPEDLALCEFDLIILPHFNNENWTLSAKAHPWLSKQALQILNIDYDEIAPT
LYSDYFNLFLQNKQIVILNAKKYDGKLSVPSNLFLKLEKGSVSPRDLITGSSNYMDTVVKPRYDKSIEIHSPSFPTTLSV
TEIETLIKNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYINLNLLDKQNALINIGNHILYSTIL
PSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFETKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTK
KEIELGLSPQLIIESLMLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITSTEPYVHTTEITLSIETL
NRHKAGLVKLLEHYITNQFFSYDLNLSKYNDYLHLSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y550_RICCN (Q92I70)

Other databases:

- EMBL:   AE006914
- PIR:   F97768
- RefSeq:   NP_360187.1
- GeneID:   928760
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC0550
- NMPDR:   fig|272944.1.peg.550
- OMA:   NPYGFYA
- ProtClustDB:   CLSK870905
- BioCyc:   RCON272944:RC0550-MONOMER
- InterPro:   IPR011335
- InterPro:   IPR022439
- TIGRFAMs:   TIGR03777

Pfam domain/function: SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 97685; Mature: 97553

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADYSFLKSFAEYIIDKLGKDTKVQIILPNNFSCLELKKILTDKYKIKLPIIIPFNSLI
CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEEEECCHHHH
SKKIDSDYISKIEELLILSSIITEYKELPLNKNESLKAAELLRKLFNDLIINNIDIKLIE
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
VYNNSNYWQKIYKFLEYCFLRWQEEISFTQKQTKAVYKLKLLQEEIIKIKTGHKQVILAG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
IFKPNVFFKRFEEELKDYIIHYNPASKQISDGISYYEPNDIYEETKQISYICSRNKDRRI
ECCCHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
AIVTNNNKLKRVYCNFLDKYEDLLGNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNP
EEEECCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
LINCPTVQQLELMLSNKNRFISSPKYLLQLQFDNEDIREYCRNLIDILFTDTPHNIQAIL
CCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHEECCCCCCHHHHH
TLTKEITEKLLPTIWEKEGGAELLEFLTNLTAYSKYINSTDKKDFPKIFSFLLSNIKYYK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEC
NTDAASIIIGRPEDLALCEFDLIILPHFNNENWTLSAKAHPWLSKQALQILNIDYDEIAP
CCCCEEEEEECCCCCEEEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCHHHHHH
TLYSDYFNLFLQNKQIVILNAKKYDGKLSVPSNLFLKLEKGSVSPRDLITGSSNYMDTVV
HHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCEEEEEECCCCCCHHEECCCCCCHHHCC
KPRYDKSIEIHSPSFPTTLSVTEIETLIKNPYGFYAKKILGLRKKDHIWEEPKISDFGNL
CCCCCCEEEEECCCCCCEEEHHHHHHHHCCCCHHHHHHHHCCCHHCCCCCCCCCCHHHHH
IHKVLEEYSKNYDKQYINLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAF
HHHHHHHHHCCCCCEEEEEEEEECCCCEEECCCHHHHHHHCCCCCCCEEEEEEEEEEEEE
ILFDIERRKNCKEIYFETKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPT
EEEEEHHCCCCHHEEEECCCCEEEEEECCCEEEEEEECEEEEECCCCEEEEEECCCCCCC
KKEIELGLSPQLIIESLMLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYV
HHHEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCCCCCCEECCCEEEEEE
KITSTEPYVHTTEITLSIETLNRHKAGLVKLLEHYITNQFFSYDLNLSKYNDYLHLSR
EEECCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCEEEECC
>Mature Secondary Structure 
TADYSFLKSFAEYIIDKLGKDTKVQIILPNNFSCLELKKILTDKYKIKLPIIIPFNSLI
CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEEEECCHHHH
SKKIDSDYISKIEELLILSSIITEYKELPLNKNESLKAAELLRKLFNDLIINNIDIKLIE
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
VYNNSNYWQKIYKFLEYCFLRWQEEISFTQKQTKAVYKLKLLQEEIIKIKTGHKQVILAG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
IFKPNVFFKRFEEELKDYIIHYNPASKQISDGISYYEPNDIYEETKQISYICSRNKDRRI
ECCCHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
AIVTNNNKLKRVYCNFLDKYEDLLGNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNP
EEEECCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
LINCPTVQQLELMLSNKNRFISSPKYLLQLQFDNEDIREYCRNLIDILFTDTPHNIQAIL
CCCCCCHHHHHHHHCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHEECCCCCCHHHHH
TLTKEITEKLLPTIWEKEGGAELLEFLTNLTAYSKYINSTDKKDFPKIFSFLLSNIKYYK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEC
NTDAASIIIGRPEDLALCEFDLIILPHFNNENWTLSAKAHPWLSKQALQILNIDYDEIAP
CCCCEEEEEECCCCCEEEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCHHHHHH
TLYSDYFNLFLQNKQIVILNAKKYDGKLSVPSNLFLKLEKGSVSPRDLITGSSNYMDTVV
HHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCEEEEEECCCCCCHHEECCCCCCHHHCC
KPRYDKSIEIHSPSFPTTLSVTEIETLIKNPYGFYAKKILGLRKKDHIWEEPKISDFGNL
CCCCCCEEEEECCCCCCEEEHHHHHHHHCCCCHHHHHHHHCCCHHCCCCCCCCCCHHHHH
IHKVLEEYSKNYDKQYINLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAF
HHHHHHHHHCCCCCEEEEEEEEECCCCEEECCCHHHHHHHCCCCCCCEEEEEEEEEEEEE
ILFDIERRKNCKEIYFETKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPT
EEEEEHHCCCCHHEEEECCCCEEEEEECCCEEEEEEECEEEEECCCCEEEEEECCCCCCC
KKEIELGLSPQLIIESLMLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYV
HHHEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCCCCCCEECCCEEEEEE
KITSTEPYVHTTEITLSIETLNRHKAGLVKLLEHYITNQFFSYDLNLSKYNDYLHLSR
EEECCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11557893