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The map label for this gene is 15892465

Identifier: 15892465

GI number: 15892465

Start: 532111

End: 533106

Strand: Reverse

Name: 15892465

Synonym: RC0542

Alternate gene names: NA

Gene position: 533106-532111 (Counterclockwise)

Preceding gene: 15892473

Following gene: 15892464

Centisome position: 42.02

GC content: 29.52

Gene sequence:

>996_bases
ATGCAAAAATTTTTATCTTTAATAATTGTAATTCTAATACTTTACAATATAGTAAAGTTAAAAATATCTCCCGACAACAA
TAATCTTACAACTGTAGAGCAAACGGCTTCAAATAATTCATCTACCGATGAAAACCAAACTAGTATAAATAATGAACCTC
CTATTTCATTAAACGGCAACTTATTTGAACGTACGGTTTCAAAAATAGTAATAAATGCTCTTAAAACCGAAGAAGGGAAA
GCATTTTTTGAAAATATTTTACAACCGTTAAATGGACCTATCAATCCTAATGATTACACTATTGAAGTACGTAAGGATTT
AGTAAAAACACTGTTCAAAATTAATACGCTTGGTAGCGGTAATATCGGTCCCGCTTCTTGCGGACATGTAGTTACCGTAT
TTTATCAAATATCAGATATGAACAATACTTTAATATCTGAAGATACTAAGACTTTTACTTTAGGCTCTGCTCCTGTAATG
CTTGGCTTAGATAATGTAATAATCGGTATGATGGTAGGAGAAGCACGAGAAGCTATTATTCCGGCAAAATATGCTGTTAA
TAATAGTAATAATATTATCTTCGATGATGCTTATAATTATAAAGTTAATGTAATTTTAAAATCCATATTACCGCAAAATT
TTGTTAAAAGTAATGAAGTTAAAATTTATGACGATGAGATAGCTTATCGTGTTCCTTTATTATGTGGTGAAAAAGTAAGC
TTTAATGCTAAAATTACTCGCTTATCAAACGGTAAAATACTATATGATTCAAAAGCAAAGGGACAACAAATAGATATGAA
AATCGGCGATATTACATATCCTTTAATTTTTTCTTACGCCTTGCAAGGTAAAGTAACGATTGGAACACGCAGTGTTATTG
CTAAAGGCAAAACATTTAAAACTTTAGGTTCTAACATAAATAAAATTATTTCTCATGAATCATTACCGACAAATGAATAT
CTTTTGCTTGAACTAGGAGACTTTAAACAAAATTAA

Upstream 100 bases:

>100_bases
ATCAATTATTTTTATTAATCAAATTATTTTTATTCTCATTTGATTATTAAGTAATTGATTGTTATAGTAAACTTTGTTAT
ACTAAAAATATTATATATAT

Downstream 100 bases:

>100_bases
ATAAATATGAAACAAAATAAAATTCAAAGACAAAAAAATTATATTTTATTATCTATCCTTGTCACAATGATAATAATTGT
ATATCTTATAGCATTAATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MQKFLSLIIVILILYNIVKLKISPDNNNLTTVEQTASNNSSTDENQTSINNEPPISLNGNLFERTVSKIVINALKTEEGK
AFFENILQPLNGPINPNDYTIEVRKDLVKTLFKINTLGSGNIGPASCGHVVTVFYQISDMNNTLISEDTKTFTLGSAPVM
LGLDNVIIGMMVGEAREAIIPAKYAVNNSNNIIFDDAYNYKVNVILKSILPQNFVKSNEVKIYDDEIAYRVPLLCGEKVS
FNAKITRLSNGKILYDSKAKGQQIDMKIGDITYPLIFSYALQGKVTIGTRSVIAKGKTFKTLGSNINKIISHESLPTNEY
LLLELGDFKQN

Sequences:

>Translated_331_residues
MQKFLSLIIVILILYNIVKLKISPDNNNLTTVEQTASNNSSTDENQTSINNEPPISLNGNLFERTVSKIVINALKTEEGK
AFFENILQPLNGPINPNDYTIEVRKDLVKTLFKINTLGSGNIGPASCGHVVTVFYQISDMNNTLISEDTKTFTLGSAPVM
LGLDNVIIGMMVGEAREAIIPAKYAVNNSNNIIFDDAYNYKVNVILKSILPQNFVKSNEVKIYDDEIAYRVPLLCGEKVS
FNAKITRLSNGKILYDSKAKGQQIDMKIGDITYPLIFSYALQGKVTIGTRSVIAKGKTFKTLGSNINKIISHESLPTNEY
LLLELGDFKQN
>Mature_331_residues
MQKFLSLIIVILILYNIVKLKISPDNNNLTTVEQTASNNSSTDENQTSINNEPPISLNGNLFERTVSKIVINALKTEEGK
AFFENILQPLNGPINPNDYTIEVRKDLVKTLFKINTLGSGNIGPASCGHVVTVFYQISDMNNTLISEDTKTFTLGSAPVM
LGLDNVIIGMMVGEAREAIIPAKYAVNNSNNIIFDDAYNYKVNVILKSILPQNFVKSNEVKIYDDEIAYRVPLLCGEKVS
FNAKITRLSNGKILYDSKAKGQQIDMKIGDITYPLIFSYALQGKVTIGTRSVIAKGKTFKTLGSNINKIISHESLPTNEY
LLLELGDFKQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y542_RICCN (Q92I78)

Other databases:

- EMBL:   AE006914
- PIR:   F97767
- RefSeq:   NP_360179.1
- ProteinModelPortal:   Q92I78
- SMR:   Q92I78
- GeneID:   927654
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC0542
- NMPDR:   fig|272944.1.peg.542
- OMA:   VPLLCGE
- ProtClustDB:   CLSK870898
- BioCyc:   RCON272944:RC0542-MONOMER
- InterPro:   IPR001179
- PANTHER:   PTHR10516

Pfam domain/function: PF00254 FKBP_C

EC number: NA

Molecular weight: Translated: 36638; Mature: 36638

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKFLSLIIVILILYNIVKLKISPDNNNLTTVEQTASNNSSTDENQTSINNEPPISLNGN
CHHHHHHHHHHHHHHHEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCH
LFERTVSKIVINALKTEEGKAFFENILQPLNGPINPNDYTIEVRKDLVKTLFKINTLGSG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCC
NIGPASCGHVVTVFYQISDMNNTLISEDTKTFTLGSAPVMLGLDNVIIGMMVGEAREAII
CCCCCCCCCEEEEEEEEECCCCCEECCCCCEEEECCCCEEEEHHHHHEEEHHCCHHHHCC
PAKYAVNNSNNIIFDDAYNYKVNVILKSILPQNFVKSNEVKIYDDEIAYRVPLLCGEKVS
CCEEEECCCCCEEEECCCCEEEEEHHHHHCCHHHHCCCCEEEEECCEEEEECEEECCCEE
FNAKITRLSNGKILYDSKAKGQQIDMKIGDITYPLIFSYALQGKVTIGTRSVIAKGKTFK
CCEEEEEECCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHCCEEEECCHHHHCCCCCHH
TLGSNINKIISHESLPTNEYLLLELGDFKQN
HHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MQKFLSLIIVILILYNIVKLKISPDNNNLTTVEQTASNNSSTDENQTSINNEPPISLNGN
CHHHHHHHHHHHHHHHEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCH
LFERTVSKIVINALKTEEGKAFFENILQPLNGPINPNDYTIEVRKDLVKTLFKINTLGSG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCCCC
NIGPASCGHVVTVFYQISDMNNTLISEDTKTFTLGSAPVMLGLDNVIIGMMVGEAREAII
CCCCCCCCCEEEEEEEEECCCCCEECCCCCEEEECCCCEEEEHHHHHEEEHHCCHHHHCC
PAKYAVNNSNNIIFDDAYNYKVNVILKSILPQNFVKSNEVKIYDDEIAYRVPLLCGEKVS
CCEEEECCCCCEEEECCCCEEEEEHHHHHCCHHHHCCCCEEEEECCEEEEECEEECCCEE
FNAKITRLSNGKILYDSKAKGQQIDMKIGDITYPLIFSYALQGKVTIGTRSVIAKGKTFK
CCEEEEEECCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHCCEEEECCHHHHCCCCCHH
TLGSNINKIISHESLPTNEYLLLELGDFKQN
HHHHHHHHHHCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893