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The map label for this gene is 15892409

Identifier: 15892409

GI number: 15892409

Start: 480850

End: 482085

Strand: Reverse

Name: 15892409

Synonym: RC0486

Alternate gene names: NA

Gene position: 482085-480850 (Counterclockwise)

Preceding gene: 15892410

Following gene: 15892408

Centisome position: 38.0

GC content: 31.88

Gene sequence:

>1236_bases
ATGCAATATTTAATTTCAAGTTTAATATTTTTAATTCCAAGCCTTGGGATGCTGGCGGGCTTATCCGCTGCAGCTACTGT
TACAATTTTTTTGCTTATATCATTCCTGCGAGGTATTAATCGTCATTGCGAGCGACTGCAAGGAGTGTGGCAATCCAGTA
ACAATGTCATACCGTGGCTTGACCACGGTATCCAAAAAATACAAAAAGACTGGATCCCACTACAAGCTCACGGGATAACA
ATGTTATTCACCGCTTGGTGCTTTATATCTTGTTTATTCGCAATTCATCTTATTAATAGCTTAGCTACTTTTACTCAAGT
TTTTATACTCTTATTTCTTGGCTTTGCAGTTAGTAATTCTGCTCCTTTTCAAAATCGCTTACAACTTAAAAAAGCCTTAA
TATTCGGAATTCTCACAGCAATATTATTATTCTTCATCGAATATTCTTCTAATGGATTTTTAACAAGAATATTCAAAACT
AGTTTTGCCTTATATATGCTAGATCGTGGTTGTGCTTTACTTTCAATTACCGCTTGGGTAGCAATTATAATTTTACTTTC
TAACGGTAAAAAACGACATACCTTAATGCTATATATATTAGTACTTTATTTACTAAGTATTTCCGATAGTTTAGCAAGTT
TTTTAGGCTTCGGTATAGGAGGAGTAATATTTATTTTAACAAGATTTATGAAGCCGATATTTTTCAAATTAATCGCAATA
AGTTTAATTACCGGCTCGTTACTATTTCCTGTGATAGCTAAACAAATAGAACCACAAGATTTATCTGAAAAATATTTAGC
TACACAACCTTCCGCTGCTCATCGTTTATTTATTTGGCATTTTGTCGCAAACAAAATCATTGAAAAGCCGATTTTAGGCT
ATGGCTTAGCTTCTTCTAAATATATCAAAGCTGGTGATAGTGAAATGATCGATTACAACGGAGAAAAATGGCATCCTTTA
CCGCTTCATCCTCATAATAATATATTACAAATTACTCTTGAACTCGGTATAATAGGTTTAATATTATTTTTATGCTTAGT
TTATAAATATCTCAAACAAATTAGTAATCTCGAAAATAAAAATTTCAAGGCAATTTCCTATGCATGTTTTATAAATTACT
ATATTATCGGCATGATTTCATATAATATTTGGCAAATATGGTGGATATCAAGCGGTATTTGGGTACTAGTTTTAATGAAG
CTACTAGTTAAACCTGATATTGTCATTGATAATTGA

Upstream 100 bases:

>100_bases
TCCTAATGTACTCTTTCAAGGATGGATGATTTCTTCAAGCATTTCACTTTCAACGTTTGAACACCCAATCTACGAAATTT
TTGCTAAAGATTGTTTTTAG

Downstream 100 bases:

>100_bases
TGCTATTTGAGGTAAATATAGAGTTAAGTGTCATTAAATCTACGTCATTGCAAGCAGCCATAGGCTGCGTGGCAATCTCA
TCAAATATCCTGAGATTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MQYLISSLIFLIPSLGMLAGLSAAATVTIFLLISFLRGINRHCERLQGVWQSSNNVIPWLDHGIQKIQKDWIPLQAHGIT
MLFTAWCFISCLFAIHLINSLATFTQVFILLFLGFAVSNSAPFQNRLQLKKALIFGILTAILLFFIEYSSNGFLTRIFKT
SFALYMLDRGCALLSITAWVAIIILLSNGKKRHTLMLYILVLYLLSISDSLASFLGFGIGGVIFILTRFMKPIFFKLIAI
SLITGSLLFPVIAKQIEPQDLSEKYLATQPSAAHRLFIWHFVANKIIEKPILGYGLASSKYIKAGDSEMIDYNGEKWHPL
PLHPHNNILQITLELGIIGLILFLCLVYKYLKQISNLENKNFKAISYACFINYYIIGMISYNIWQIWWISSGIWVLVLMK
LLVKPDIVIDN

Sequences:

>Translated_411_residues
MQYLISSLIFLIPSLGMLAGLSAAATVTIFLLISFLRGINRHCERLQGVWQSSNNVIPWLDHGIQKIQKDWIPLQAHGIT
MLFTAWCFISCLFAIHLINSLATFTQVFILLFLGFAVSNSAPFQNRLQLKKALIFGILTAILLFFIEYSSNGFLTRIFKT
SFALYMLDRGCALLSITAWVAIIILLSNGKKRHTLMLYILVLYLLSISDSLASFLGFGIGGVIFILTRFMKPIFFKLIAI
SLITGSLLFPVIAKQIEPQDLSEKYLATQPSAAHRLFIWHFVANKIIEKPILGYGLASSKYIKAGDSEMIDYNGEKWHPL
PLHPHNNILQITLELGIIGLILFLCLVYKYLKQISNLENKNFKAISYACFINYYIIGMISYNIWQIWWISSGIWVLVLMK
LLVKPDIVIDN
>Mature_411_residues
MQYLISSLIFLIPSLGMLAGLSAAATVTIFLLISFLRGINRHCERLQGVWQSSNNVIPWLDHGIQKIQKDWIPLQAHGIT
MLFTAWCFISCLFAIHLINSLATFTQVFILLFLGFAVSNSAPFQNRLQLKKALIFGILTAILLFFIEYSSNGFLTRIFKT
SFALYMLDRGCALLSITAWVAIIILLSNGKKRHTLMLYILVLYLLSISDSLASFLGFGIGGVIFILTRFMKPIFFKLIAI
SLITGSLLFPVIAKQIEPQDLSEKYLATQPSAAHRLFIWHFVANKIIEKPILGYGLASSKYIKAGDSEMIDYNGEKWHPL
PLHPHNNILQITLELGIIGLILFLCLVYKYLKQISNLENKNFKAISYACFINYYIIGMISYNIWQIWWISSGIWVLVLMK
LLVKPDIVIDN

Specific function: Unknown

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the O-antigen polymerase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y486_RICCN (Q92ID4)

Other databases:

- EMBL:   AE006914
- PIR:   F97760
- RefSeq:   NP_360123.1
- GeneID:   927612
- GenomeReviews:   AE006914_GR
- KEGG:   rco:RC0486
- NMPDR:   fig|272944.1.peg.486
- OMA:   IEYSSHG
- ProtClustDB:   CLSK870880
- BioCyc:   RCON272944:RC0486-MONOMER
- InterPro:   IPR007016

Pfam domain/function: PF04932 Wzy_C

EC number: NA

Molecular weight: Translated: 46613; Mature: 46613

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc003268)-; HASH(0xae29e8c)-; HASH(0xc9e83bc)-; HASH(0xc8f0f84)-; HASH(0xb00a6bc)-; HASH(0xba514dc)-; HASH(0xb2fc338)-; HASH(0xba7c05c)-; HASH(0xc62a00c)-; HASH(0xc0a728c)-;

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYLISSLIFLIPSLGMLAGLSAAATVTIFLLISFLRGINRHCERLQGVWQSSNNVIPWL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
DHGIQKIQKDWIPLQAHGITMLFTAWCFISCLFAIHLINSLATFTQVFILLFLGFAVSNS
HHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APFQNRLQLKKALIFGILTAILLFFIEYSSNGFLTRIFKTSFALYMLDRGCALLSITAWV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AIIILLSNGKKRHTLMLYILVLYLLSISDSLASFLGFGIGGVIFILTRFMKPIFFKLIAI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLITGSLLFPVIAKQIEPQDLSEKYLATQPSAAHRLFIWHFVANKIIEKPILGYGLASSK
HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
YIKAGDSEMIDYNGEKWHPLPLHPHNNILQITLELGIIGLILFLCLVYKYLKQISNLENK
EEECCCCCEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NFKAISYACFINYYIIGMISYNIWQIWWISSGIWVLVLMKLLVKPDIVIDN
CCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCEECH
>Mature Secondary Structure
MQYLISSLIFLIPSLGMLAGLSAAATVTIFLLISFLRGINRHCERLQGVWQSSNNVIPWL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
DHGIQKIQKDWIPLQAHGITMLFTAWCFISCLFAIHLINSLATFTQVFILLFLGFAVSNS
HHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APFQNRLQLKKALIFGILTAILLFFIEYSSNGFLTRIFKTSFALYMLDRGCALLSITAWV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
AIIILLSNGKKRHTLMLYILVLYLLSISDSLASFLGFGIGGVIFILTRFMKPIFFKLIAI
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLITGSLLFPVIAKQIEPQDLSEKYLATQPSAAHRLFIWHFVANKIIEKPILGYGLASSK
HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
YIKAGDSEMIDYNGEKWHPLPLHPHNNILQITLELGIIGLILFLCLVYKYLKQISNLENK
EEECCCCCEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NFKAISYACFINYYIIGMISYNIWQIWWISSGIWVLVLMKLLVKPDIVIDN
CCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCEECH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11557893