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The map label for this gene is repC [H]

Identifier: 16119857

GI number: 16119857

Start: 54905

End: 56224

Strand: Direct

Name: repC [H]

Synonym: Atu6045

Alternate gene names: 16119857

Gene position: 54905-56224 (Clockwise)

Preceding gene: 16119856

Following gene: 16119859

Centisome position: 25.63

GC content: 58.41

Gene sequence:

>1320_bases
ATGCAGACGCATATCTCAACGACGTCCTTTGGGCGGCGGCCGATGACACTCGGCCATATTGCAAGCCAGATGGCAGCAAA
AGCGGTCGCATCAGACACTGTCGCCCACAAATGGCAGGTCTTCCAGCACATCCGTGAATCCCGGGGACTGATCGGAGCCA
CGGACCGCTCACTCTCGATCCTGAACGCGCTGTTGACGTTTTACCCGGAGACCGCCTTGACTGGTGGTGCCGAACTGGTC
GTATGGCCTTCTAACGAACAGCTGATGGCTCGCGCCAACGGCATGCCCGCCACGACACTGCGCCGGCATCTTGCCATACT
GGTTGATTGCGGGCTCATCATTCGCCGCGACAGCCCCAATGGCAAGCGGTTCGCCCGCAAGGGAAGGGGAGGGGAGATTG
AGCAGGCCTATGGGTTCGATCTGTCGCCGATCGTCGCGCGGGCCGAGGAGTTCCGAGATCTGGCCCAGACAGTGCAAGCT
GAAAAAAAGGCCTTCCGGGTGGCCAAGGAGCGCTTGACTCTTCTTCGTCGTGACATTGTCAAAATGATCGAAACTGGCGT
CGAAGAGAGCGTTCCTGGAAACTGGGGAAGAGTTACCCAGACCTATCAGGGGATCATCGGCCGCCTGCCACGCTCGGCAC
CTCGGCAGCTTGTCGAGAGTATTGGGCAAGAGCTTCAGGAACTCTGCATCGAGATCCGTGACGTATTGGAATCTTTCACA
AAAACGATGAATCTGGACGCCAATGAGTCCCATATCGGTCGCCACAAACAGAATTCAAATCCAGACTCTAAATTTGAATC
TGAATACAGCTCTGGAAAAAAAGATGAAGCGGGCGGCAGCGTTGCGGAAACCGACAATGTACGGAGCTTGCCGAAACGCG
AGCTGCCTTTGGGAATCGTGCTGGATGCCTGCCCCGAAATGCGGGAATTGGCCCAGGGAGGTCCAATTCGGCATTGGCGC
GACTTGCTGGCGGCGGCTGAGCTTGCCCGGCCGATGCTGGGGATTAGTCCGAGCGCCTGGCGGGAGGCCCGCGAAACCAT
GGGCGATCAACACGCGGCGATCACGCTGGCTTCGATCTATCAGCGGGCCGGTCAGATCAATAACGCTGGGGGCTATCTGC
GCAGCCTGACCGACCGGGCCAAGGATGGGAAGTTTTCGACCTGGCCGATGGTCATGGCGTTGCTCCGGGCAAAGCTGGAC
GAGCAGAAGAATGCAGTTGGCGCTGGAAAGCCGCGAACTGCTGAGGAGGTCGAGGATGACAGCCGCCTCCACGTATCGGA
ATCGCTGCTCAAAAACCTGCGAAAGCCGAGATCTTGGTGA

Upstream 100 bases:

>100_bases
TAAGAGAATCGCATTTCCAGGAATCGTAGTCAAGGGTCCCGTAAGGGAAAGCGTCATTTCGACGGGCGGATTTCAATTGC
CTAACAAAAGGTAAAAGGAA

Downstream 100 bases:

>100_bases
TCCTCTCGCTATTCAGCCGCGGCGATGTCGACGTCGGTGATCAACCCGGAACGTCGGGCGCGGTCGATCAGGTTCTTGAC
GGACGAGGGCGCCCATTTGG

Product: replication initiation protein RepC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MQTHISTTSFGRRPMTLGHIASQMAAKAVASDTVAHKWQVFQHIRESRGLIGATDRSLSILNALLTFYPETALTGGAELV
VWPSNEQLMARANGMPATTLRRHLAILVDCGLIIRRDSPNGKRFARKGRGGEIEQAYGFDLSPIVARAEEFRDLAQTVQA
EKKAFRVAKERLTLLRRDIVKMIETGVEESVPGNWGRVTQTYQGIIGRLPRSAPRQLVESIGQELQELCIEIRDVLESFT
KTMNLDANESHIGRHKQNSNPDSKFESEYSSGKKDEAGGSVAETDNVRSLPKRELPLGIVLDACPEMRELAQGGPIRHWR
DLLAAAELARPMLGISPSAWREARETMGDQHAAITLASIYQRAGQINNAGGYLRSLTDRAKDGKFSTWPMVMALLRAKLD
EQKNAVGAGKPRTAEEVEDDSRLHVSESLLKNLRKPRSW

Sequences:

>Translated_439_residues
MQTHISTTSFGRRPMTLGHIASQMAAKAVASDTVAHKWQVFQHIRESRGLIGATDRSLSILNALLTFYPETALTGGAELV
VWPSNEQLMARANGMPATTLRRHLAILVDCGLIIRRDSPNGKRFARKGRGGEIEQAYGFDLSPIVARAEEFRDLAQTVQA
EKKAFRVAKERLTLLRRDIVKMIETGVEESVPGNWGRVTQTYQGIIGRLPRSAPRQLVESIGQELQELCIEIRDVLESFT
KTMNLDANESHIGRHKQNSNPDSKFESEYSSGKKDEAGGSVAETDNVRSLPKRELPLGIVLDACPEMRELAQGGPIRHWR
DLLAAAELARPMLGISPSAWREARETMGDQHAAITLASIYQRAGQINNAGGYLRSLTDRAKDGKFSTWPMVMALLRAKLD
EQKNAVGAGKPRTAEEVEDDSRLHVSESLLKNLRKPRSW
>Mature_439_residues
MQTHISTTSFGRRPMTLGHIASQMAAKAVASDTVAHKWQVFQHIRESRGLIGATDRSLSILNALLTFYPETALTGGAELV
VWPSNEQLMARANGMPATTLRRHLAILVDCGLIIRRDSPNGKRFARKGRGGEIEQAYGFDLSPIVARAEEFRDLAQTVQA
EKKAFRVAKERLTLLRRDIVKMIETGVEESVPGNWGRVTQTYQGIIGRLPRSAPRQLVESIGQELQELCIEIRDVLESFT
KTMNLDANESHIGRHKQNSNPDSKFESEYSSGKKDEAGGSVAETDNVRSLPKRELPLGIVLDACPEMRELAQGGPIRHWR
DLLAAAELARPMLGISPSAWREARETMGDQHAAITLASIYQRAGQINNAGGYLRSLTDRAKDGKFSTWPMVMALLRAKLD
EQKNAVGAGKPRTAEEVEDDSRLHVSESLLKNLRKPRSW

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 48719; Mature: 48719

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTHISTTSFGRRPMTLGHIASQMAAKAVASDTVAHKWQVFQHIRESRGLIGATDRSLSI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHH
LNALLTFYPETALTGGAELVVWPSNEQLMARANGMPATTLRRHLAILVDCGLIIRRDSPN
HHHHHHHCCHHHHCCCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCC
GKRFARKGRGGEIEQAYGFDLSPIVARAEEFRDLAQTVQAEKKAFRVAKERLTLLRRDIV
HHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMIETGVEESVPGNWGRVTQTYQGIIGRLPRSAPRQLVESIGQELQELCIEIRDVLESFT
HHHHHCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTMNLDANESHIGRHKQNSNPDSKFESEYSSGKKDEAGGSVAETDNVRSLPKRELPLGIV
HHCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHH
LDACPEMRELAQGGPIRHWRDLLAAAELARPMLGISPSAWREARETMGDQHAAITLASIY
HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH
QRAGQINNAGGYLRSLTDRAKDGKFSTWPMVMALLRAKLDEQKNAVGAGKPRTAEEVEDD
HHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCC
SRLHVSESLLKNLRKPRSW
CHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQTHISTTSFGRRPMTLGHIASQMAAKAVASDTVAHKWQVFQHIRESRGLIGATDRSLSI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHH
LNALLTFYPETALTGGAELVVWPSNEQLMARANGMPATTLRRHLAILVDCGLIIRRDSPN
HHHHHHHCCHHHHCCCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCC
GKRFARKGRGGEIEQAYGFDLSPIVARAEEFRDLAQTVQAEKKAFRVAKERLTLLRRDIV
HHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMIETGVEESVPGNWGRVTQTYQGIIGRLPRSAPRQLVESIGQELQELCIEIRDVLESFT
HHHHHCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTMNLDANESHIGRHKQNSNPDSKFESEYSSGKKDEAGGSVAETDNVRSLPKRELPLGIV
HHCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHH
LDACPEMRELAQGGPIRHWRDLLAAAELARPMLGISPSAWREARETMGDQHAAITLASIY
HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH
QRAGQINNAGGYLRSLTDRAKDGKFSTWPMVMALLRAKLDEQKNAVGAGKPRTAEEVEDD
HHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCC
SRLHVSESLLKNLRKPRSW
CHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA