| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41410423
Identifier: 41410423
GI number: 41410423
Start: 4799902
End: 4800822
Strand: Reverse
Name: 41410423
Synonym: MAP4325c
Alternate gene names: NA
Gene position: 4800822-4799902 (Counterclockwise)
Preceding gene: 41410424
Following gene: 41410422
Centisome position: 99.4
GC content: 73.94
Gene sequence:
>921_bases GTGGGTGGTCCCGGGGGAATTATCAAAAATGATCTGCCGACTACTACGGCGATAGTCGGGGGACCACCGGCGTCGATTCC GCGGCCGTTTCCGGTGCCGCCGGGCGGTACGTCACCCGCCGACGCCGGGCAGGGCATGGTCGGCGGGGCCGGCAACGCCA ACGTCCCCAAGGACGCCGCCGACGCCGCCGCCGCCGACGCGGACCGCAAGGCCCGTGCCGCCGACGCCGCCGCGAAGTTC CCGGCCAACGAGGCCAACGGCTCGCAAGAGATGCAGATGCTGCAGCAGATGCTGTCCAGCGTCACCGGCGCGCTCGGCGG GGCGATGGGCGGCGTCATGGGACCGCTCACCCAGCTTCCCCAGCAGGCGATGCAGGCGGGCCAAAGCGCCCTGCAGCCGC TGATGAGCGCCGTTCAGGGCGCCCACGGCGCGGCGTCGCTGGCCGACAACGCGCATCTGGTCGACAGCGTCGGCGGCGCC GGATCCGGCCTGGGCGGCGGTGCGGGCGCAGGTGGCGGCGGCGCCGGCTTGGGCGGGGGCGGCACGGTTCCGACCAGCTC GCTGGGCCCGCCGCCGGTGCCGACGTCATCCCCGCCGACCACCCCGGCCGGCGCCAAAGCCGCGATGATGCCGCCGACCG GCGGGATGCCCGCCATGCCCGGACAAACCGGCATGACGGGCATGCCGATGATGCCGCCGGGCGCGATGGGCGCCGGCGGC GAAGGCGGCAACAAGGACAAGCCGGTCGAGAAGCGGGTCACCGCCCCGGGCGTGCCCAACGGCCAGCCGGTCAAGGGCCG CTTGACGATCCCGCCCAGCGCTCCGGGCAGCAAGCCCGGCGAGGCCAAGCCGACCGTGGTCACCAACCGGCCCAACCGCC GGATCGTGATCATGCCGTCCGACGACGAGCCCAAGGAATAG
Upstream 100 bases:
>100_bases CTCGGGTGAATACCGTTATCGGCGCGCTGTGACAAAATGGCGATACGAATGATCGCCAGCGCTTGGATAAGCGTCGAACG AGCGGGGTGGAGGTGAGGTC
Downstream 100 bases:
>100_bases TCCACCCCGAAACCAGAGGTGAGTGGTCGGGTGGGTCCCACCGCAGTAGGGTCGCTACGTAATCGCGGCCGGCCGATCCC AACGATTCCCATGCGCGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MGGPGGIIKNDLPTTTAIVGGPPASIPRPFPVPPGGTSPADAGQGMVGGAGNANVPKDAADAAAADADRKARAADAAAKF PANEANGSQEMQMLQQMLSSVTGALGGAMGGVMGPLTQLPQQAMQAGQSALQPLMSAVQGAHGAASLADNAHLVDSVGGA GSGLGGGAGAGGGGAGLGGGGTVPTSSLGPPPVPTSSPPTTPAGAKAAMMPPTGGMPAMPGQTGMTGMPMMPPGAMGAGG EGGNKDKPVEKRVTAPGVPNGQPVKGRLTIPPSAPGSKPGEAKPTVVTNRPNRRIVIMPSDDEPKE
Sequences:
>Translated_306_residues MGGPGGIIKNDLPTTTAIVGGPPASIPRPFPVPPGGTSPADAGQGMVGGAGNANVPKDAADAAAADADRKARAADAAAKF PANEANGSQEMQMLQQMLSSVTGALGGAMGGVMGPLTQLPQQAMQAGQSALQPLMSAVQGAHGAASLADNAHLVDSVGGA GSGLGGGAGAGGGGAGLGGGGTVPTSSLGPPPVPTSSPPTTPAGAKAAMMPPTGGMPAMPGQTGMTGMPMMPPGAMGAGG EGGNKDKPVEKRVTAPGVPNGQPVKGRLTIPPSAPGSKPGEAKPTVVTNRPNRRIVIMPSDDEPKE >Mature_305_residues GGPGGIIKNDLPTTTAIVGGPPASIPRPFPVPPGGTSPADAGQGMVGGAGNANVPKDAADAAAADADRKARAADAAAKFP ANEANGSQEMQMLQQMLSSVTGALGGAMGGVMGPLTQLPQQAMQAGQSALQPLMSAVQGAHGAASLADNAHLVDSVGGAG SGLGGGAGAGGGGAGLGGGGTVPTSSLGPPPVPTSSPPTTPAGAKAAMMPPTGGMPAMPGQTGMTGMPMMPPGAMGAGGE GGNKDKPVEKRVTAPGVPNGQPVKGRLTIPPSAPGSKPGEAKPTVVTNRPNRRIVIMPSDDEPKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29206; Mature: 29074
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGPGGIIKNDLPTTTAIVGGPPASIPRPFPVPPGGTSPADAGQGMVGGAGNANVPKDAA CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH DAAAADADRKARAADAAAKFPANEANGSQEMQMLQQMLSSVTGALGGAMGGVMGPLTQLP HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQAMQAGQSALQPLMSAVQGAHGAASLADNAHLVDSVGGAGSGLGGGAGAGGGGAGLGGG HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC GTVPTSSLGPPPVPTSSPPTTPAGAKAAMMPPTGGMPAMPGQTGMTGMPMMPPGAMGAGG CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGGNKDKPVEKRVTAPGVPNGQPVKGRLTIPPSAPGSKPGEAKPTVVTNRPNRRIVIMPS CCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCEEEEECC DDEPKE CCCCCC >Mature Secondary Structure GGPGGIIKNDLPTTTAIVGGPPASIPRPFPVPPGGTSPADAGQGMVGGAGNANVPKDAA CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH DAAAADADRKARAADAAAKFPANEANGSQEMQMLQQMLSSVTGALGGAMGGVMGPLTQLP HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQAMQAGQSALQPLMSAVQGAHGAASLADNAHLVDSVGGAGSGLGGGAGAGGGGAGLGGG HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC GTVPTSSLGPPPVPTSSPPTTPAGAKAAMMPPTGGMPAMPGQTGMTGMPMMPPGAMGAGG CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGGNKDKPVEKRVTAPGVPNGQPVKGRLTIPPSAPGSKPGEAKPTVVTNRPNRRIVIMPS CCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCEEEEECC DDEPKE CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]