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The map label for this gene is fadE25 [H]

Identifier: 41410401

GI number: 41410401

Start: 4771892

End: 4773928

Strand: Reverse

Name: fadE25 [H]

Synonym: MAP4303c

Alternate gene names: 41410401

Gene position: 4773928-4771892 (Counterclockwise)

Preceding gene: 41410406

Following gene: 41410400

Centisome position: 98.84

GC content: 72.26

Gene sequence:

>2037_bases
ATGACCCTGGGGTTGAGTCCGGAGCAGCAGGAGCTCGGCGACGCCGTCGGGCAGTTCGCCGCCCGCAACGCTCCCATCGC
CGCCACCCGGGACAGCTTCGCCGAGCTCGCCGCGGGCCGGCTGCCGCGATGGTGGGACGGCTTGGTCGCCAATGGTTTTC
ACGCCGTGCACCTGCCCGAGGAGCTGGGCGGTCAGGGCGGCCGGCTGATGGACGCCGCCTGCGTGCTGGAGTCGGCGGGC
AAGTCGCTGTTGCCCGGTCCGCTGCTGCCGACGGTGGCCGCAGGCGCGGTCGCGCTGCTGGCCGACCCGGCACCGGCCGC
GCGGTCGGTGCTGCGCGACCTCGCCGCCGGCATCCCCGCGGCCGTCGTGCTGCCCGGCGACGGTGACCTGCATGCCGGGG
CCGGCGACGGGCACTGGCTGCTCAGCGGCGCCTCGGAGGTCACCGCGGGGGTGTGCGCGGCGCGCATCGTCCTGGTCGGC
GCGCGGACCCGGGACGGCGAGCTGGTGTGGGCGGCGGTGGACACCGAAAAGCCAACGGCGACAGTCGAACCCATTTCCGG
GACCGACCTCGTCGCCGACGCCGGGGTGCTGCGGCTGGACAACCACCGCGTCCTGGACTCCGAGGTGCTCACCGGCATCG
ACCCCGAGCGCGCCCGCTGCGTGGTCCTCGGGCTGGTCGCCGCCACGACCGCCGGGGTGATCCAGTGGTGCGTGCAGGCC
GTCACCGCCCACCTGCGGATCCGCGAGCAGTTCGGCAAGGTGATCGGAACCTTCCAGGCCCTGCAGCACAGCGCGGCGAT
GCTGTTGGTCAGCAGCGAGCTGGCCACCGCGGCGGCCTGGGACGCGGTCCGCGCCGGCGACGAATCGCTCGAGCAGCACC
GCATGGCCGCCGCCGGCGCGGCGGTGATGGCGATCTCGCCCGCCCCGGACCTGGTGCTCGACGCGTTGACGATGTTCGGC
GCCATCGGCTTCACCTGGGAACACGACCTGCATCTGTACTGGCGGCGCGCCATCAGCCTGGCCGCCTCGATCGGGCCGGC
CAACCGCTGGGCCCGCCGGCTCGGCGAGCTGACCTGCACCCGGCAGCGCGACATGGCGGTCAACCTGGGCGACGCGGAAT
CGGAGCTTCGCGCCAAGGTAGCCGAAACCCTCGATGCCGCATTGGAATTGCGCAACGACCAGCCCGGCCGCCAGGGCGAC
TACTCGGAATTCGAGACGGGGCCGCAGCGCACGTTGATCTCCGATGCCGGCCTGATCGCGCCGCACTGGCCCAAGCCCTG
GGGTCTGGACGCCGGCCCGCTGCGCCAGCTCATCATCGACGACGAGTTCGCCAAGCGGCCCGCGCTGGTTCGGCCGTCGC
TGGGCATCGCCGAATGGATCCTGCCCTCGGTGATCCGCGCCGCGCCGAAAGACCTGCAGGAGAAGCTGATACCGCCGACG
CTGCGCGGCGAGATCGCGTGGTGCCAGCTGTTCAGCGAACCCGGCGCCGGCTCGGACCTGGCCGCGCTGTCCACCCGGGC
CACCAAGGTCGACGGCGGCTGGACCATCAACGGCCACAAGATCTGGACGTCGGCCGCCCACCGAGCCGACTACGGCGCCC
TGCTGGCCCGCACCGACCCGCAGGCCGGCAAGCACCGCGGCATCGGCTATTTCGTCGTCGACATGCGCTCCGCCGGGATC
GAGGTCCAGCCGATCAAAACCGCCACCGGTGACGCGCATTTCAACGAGGTGTTCCTCACCGACGTCTTCGTGCCCGACGA
CATGCTGCTGGGCGAACCGACCGGGGGCTGGAACCTCGCAATCGCCACCATGGCCGAAGAACGCTCGGCCATCAGCGGTT
ACGTCAAGTTCGACCGCGCGGCCGCACTGCGCCGGCTGGCGGCCCAACCGGGGCCGGACCGCGATGATGCGCTGCGCGAG
CTCGGCAGGCTGGACGCCTACACCACGCGATCAAGGCGCTGGGAGTGCGCGAGACCATCCGGCTGCTCGACGGCCAGGCG
TCCGGGCCGGCGTCCAGCATCGCCAAGGTGGCGATGA

Upstream 100 bases:

>100_bases
CGAGACGGTCCGTCTTGCGAAAGGCGCGGCGGGTCGCCGCCAGCGGAGTCGAGAGGAATCGGTCGGTGCGGCCATCGCCA
GTGACAGTGCGGCCGTCCTC

Downstream 100 bases:

>100_bases
ATGTGCTGCTGCGACGGACATTCGAGGCCACGCTGCAGCTGACCGGGCGACTGGCGATGGCCGCCGACTCCGACCCCGCC
GTCGTCGAGCCGTATCTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 678; Mature: 677

Protein sequence:

>678_residues
MTLGLSPEQQELGDAVGQFAARNAPIAATRDSFAELAAGRLPRWWDGLVANGFHAVHLPEELGGQGGRLMDAACVLESAG
KSLLPGPLLPTVAAGAVALLADPAPAARSVLRDLAAGIPAAVVLPGDGDLHAGAGDGHWLLSGASEVTAGVCAARIVLVG
ARTRDGELVWAAVDTEKPTATVEPISGTDLVADAGVLRLDNHRVLDSEVLTGIDPERARCVVLGLVAATTAGVIQWCVQA
VTAHLRIREQFGKVIGTFQALQHSAAMLLVSSELATAAAWDAVRAGDESLEQHRMAAAGAAVMAISPAPDLVLDALTMFG
AIGFTWEHDLHLYWRRAISLAASIGPANRWARRLGELTCTRQRDMAVNLGDAESELRAKVAETLDAALELRNDQPGRQGD
YSEFETGPQRTLISDAGLIAPHWPKPWGLDAGPLRQLIIDDEFAKRPALVRPSLGIAEWILPSVIRAAPKDLQEKLIPPT
LRGEIAWCQLFSEPGAGSDLAALSTRATKVDGGWTINGHKIWTSAAHRADYGALLARTDPQAGKHRGIGYFVVDMRSAGI
EVQPIKTATGDAHFNEVFLTDVFVPDDMLLGEPTGGWNLAIATMAEERSAISGYVKFDRAAALRRLAAQPGPDRDDALRE
LGRLDAYTTRSRRWECARPSGCSTARRPGRRPASPRWR

Sequences:

>Translated_678_residues
MTLGLSPEQQELGDAVGQFAARNAPIAATRDSFAELAAGRLPRWWDGLVANGFHAVHLPEELGGQGGRLMDAACVLESAG
KSLLPGPLLPTVAAGAVALLADPAPAARSVLRDLAAGIPAAVVLPGDGDLHAGAGDGHWLLSGASEVTAGVCAARIVLVG
ARTRDGELVWAAVDTEKPTATVEPISGTDLVADAGVLRLDNHRVLDSEVLTGIDPERARCVVLGLVAATTAGVIQWCVQA
VTAHLRIREQFGKVIGTFQALQHSAAMLLVSSELATAAAWDAVRAGDESLEQHRMAAAGAAVMAISPAPDLVLDALTMFG
AIGFTWEHDLHLYWRRAISLAASIGPANRWARRLGELTCTRQRDMAVNLGDAESELRAKVAETLDAALELRNDQPGRQGD
YSEFETGPQRTLISDAGLIAPHWPKPWGLDAGPLRQLIIDDEFAKRPALVRPSLGIAEWILPSVIRAAPKDLQEKLIPPT
LRGEIAWCQLFSEPGAGSDLAALSTRATKVDGGWTINGHKIWTSAAHRADYGALLARTDPQAGKHRGIGYFVVDMRSAGI
EVQPIKTATGDAHFNEVFLTDVFVPDDMLLGEPTGGWNLAIATMAEERSAISGYVKFDRAAALRRLAAQPGPDRDDALRE
LGRLDAYTTRSRRWECARPSGCSTARRPGRRPASPRWR
>Mature_677_residues
TLGLSPEQQELGDAVGQFAARNAPIAATRDSFAELAAGRLPRWWDGLVANGFHAVHLPEELGGQGGRLMDAACVLESAGK
SLLPGPLLPTVAAGAVALLADPAPAARSVLRDLAAGIPAAVVLPGDGDLHAGAGDGHWLLSGASEVTAGVCAARIVLVGA
RTRDGELVWAAVDTEKPTATVEPISGTDLVADAGVLRLDNHRVLDSEVLTGIDPERARCVVLGLVAATTAGVIQWCVQAV
TAHLRIREQFGKVIGTFQALQHSAAMLLVSSELATAAAWDAVRAGDESLEQHRMAAAGAAVMAISPAPDLVLDALTMFGA
IGFTWEHDLHLYWRRAISLAASIGPANRWARRLGELTCTRQRDMAVNLGDAESELRAKVAETLDAALELRNDQPGRQGDY
SEFETGPQRTLISDAGLIAPHWPKPWGLDAGPLRQLIIDDEFAKRPALVRPSLGIAEWILPSVIRAAPKDLQEKLIPPTL
RGEIAWCQLFSEPGAGSDLAALSTRATKVDGGWTINGHKIWTSAAHRADYGALLARTDPQAGKHRGIGYFVVDMRSAGIE
VQPIKTATGDAHFNEVFLTDVFVPDDMLLGEPTGGWNLAIATMAEERSAISGYVKFDRAAALRRLAAQPGPDRDDALREL
GRLDAYTTRSRRWECARPSGCSTARRPGRRPASPRWR

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=191, Percent_Identity=31.413612565445, Blast_Score=80, Evalue=7e-15,
Organism=Homo sapiens, GI226958412, Length=256, Percent_Identity=25, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI4557233, Length=152, Percent_Identity=30.9210526315789, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI187960098, Length=205, Percent_Identity=27.8048780487805, Blast_Score=71, Evalue=4e-12,
Organism=Homo sapiens, GI4557231, Length=205, Percent_Identity=27.8048780487805, Blast_Score=71, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538396, Length=254, Percent_Identity=23.2283464566929, Blast_Score=69, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17505929, Length=149, Percent_Identity=26.1744966442953, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356377, Length=147, Percent_Identity=34.0136054421769, Blast_Score=77, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24646207, Length=211, Percent_Identity=26.0663507109005, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 72209; Mature: 72078

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLGLSPEQQELGDAVGQFAARNAPIAATRDSFAELAAGRLPRWWDGLVANGFHAVHLPE
CCCCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHHHCCCCHHHHHHHHCCEEEEECCH
ELGGQGGRLMDAACVLESAGKSLLPGPLLPTVAAGAVALLADPAPAARSVLRDLAAGIPA
HHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCE
AVVLPGDGDLHAGAGDGHWLLSGASEVTAGVCAARIVLVGARTRDGELVWAAVDTEKPTA
EEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHEEEECCCCCCCEEEEEECCCCCCC
TVEPISGTDLVADAGVLRLDNHRVLDSEVLTGIDPERARCVVLGLVAATTAGVIQWCVQA
EECCCCCCCCEECCCEEEECCCEEECHHHHCCCCCCHHHEEEEHHHHHHHHHHHHHHHHH
VTAHLRIREQFGKVIGTFQALQHSAAMLLVSSELATAAAWDAVRAGDESLEQHRMAAAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
AVMAISPAPDLVLDALTMFGAIGFTWEHDLHLYWRRAISLAASIGPANRWARRLGELTCT
EEEEECCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
RQRDMAVNLGDAESELRAKVAETLDAALELRNDQPGRQGDYSEFETGPQRTLISDAGLIA
CCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEECCCCCCCC
PHWPKPWGLDAGPLRQLIIDDEFAKRPALVRPSLGIAEWILPSVIRAAPKDLQEKLIPPT
CCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCC
LRGEIAWCQLFSEPGAGSDLAALSTRATKVDGGWTINGHKIWTSAAHRADYGALLARTDP
CCCCEEEEEEECCCCCCCCHHHHHHCCEECCCCEEECCCEEECHHHHCCCCCEEEECCCC
QAGKHRGIGYFVVDMRSAGIEVQPIKTATGDAHFNEVFLTDVFVPDDMLLGEPTGGWNLA
CCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCEECCCCCCCEEE
IATMAEERSAISGYVKFDRAAALRRLAAQPGPDRDDALRELGRLDAYTTRSRRWECARPS
EEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCC
GCSTARRPGRRPASPRWR
CCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TLGLSPEQQELGDAVGQFAARNAPIAATRDSFAELAAGRLPRWWDGLVANGFHAVHLPE
CCCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHHHCCCCHHHHHHHHCCEEEEECCH
ELGGQGGRLMDAACVLESAGKSLLPGPLLPTVAAGAVALLADPAPAARSVLRDLAAGIPA
HHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCE
AVVLPGDGDLHAGAGDGHWLLSGASEVTAGVCAARIVLVGARTRDGELVWAAVDTEKPTA
EEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHEEEECCCCCCCEEEEEECCCCCCC
TVEPISGTDLVADAGVLRLDNHRVLDSEVLTGIDPERARCVVLGLVAATTAGVIQWCVQA
EECCCCCCCCEECCCEEEECCCEEECHHHHCCCCCCHHHEEEEHHHHHHHHHHHHHHHHH
VTAHLRIREQFGKVIGTFQALQHSAAMLLVSSELATAAAWDAVRAGDESLEQHRMAAAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
AVMAISPAPDLVLDALTMFGAIGFTWEHDLHLYWRRAISLAASIGPANRWARRLGELTCT
EEEEECCCHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
RQRDMAVNLGDAESELRAKVAETLDAALELRNDQPGRQGDYSEFETGPQRTLISDAGLIA
CCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCEECCCCCCCC
PHWPKPWGLDAGPLRQLIIDDEFAKRPALVRPSLGIAEWILPSVIRAAPKDLQEKLIPPT
CCCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCC
LRGEIAWCQLFSEPGAGSDLAALSTRATKVDGGWTINGHKIWTSAAHRADYGALLARTDP
CCCCEEEEEEECCCCCCCCHHHHHHCCEECCCCEEECCCEEECHHHHCCCCCEEEECCCC
QAGKHRGIGYFVVDMRSAGIEVQPIKTATGDAHFNEVFLTDVFVPDDMLLGEPTGGWNLA
CCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCEECCCCCCCEEE
IATMAEERSAISGYVKFDRAAALRRLAAQPGPDRDDALRELGRLDAYTTRSRRWECARPS
EEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCC
GCSTARRPGRRPASPRWR
CCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]