| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is nfdA [H]
Identifier: 41410147
GI number: 41410147
Start: 4508816
End: 4510540
Strand: Direct
Name: nfdA [H]
Synonym: MAP4049
Alternate gene names: 41410147
Gene position: 4508816-4510540 (Clockwise)
Preceding gene: 41410145
Following gene: 41410148
Centisome position: 93.35
GC content: 70.32
Gene sequence:
>1725_bases ATGGCGTGGCTCCTCCTCATCGCTTGGCTCTGCATCGTCGCCGGCGCGACTCATGGGGCCAGACTAGAACGTGTTGCAAT TCCGGTCAGCCGCACCCTCGGACCGATAGCATCCGTGCACATGGGGCAGGCAGATCTAGTCCTCACCGGAACCGTACTGA CCGTCGACGAGGCGCGGCCCACCGCCGAGGCGCTGGCCGTCGCCGACGGCCGCATCGTCGCCGTGGGAACCCGCGCCGAA ATCGCGGCGCACGTCGGCCCGCACACCCAAACCGTCGACATCGGCGACGGCTGCGTGATGCCGGGATTCGTTGAGGCGCA CGGGCATCCGCTGATGGAGGCGGTCGCGCTGTCGGACCGCATCGTGGACATCCGCCCGGTCACCCTGGCCAACGCGGACG ACGTCGTCGCCGCCGTCAAGAGTGAGGTCGGCAAGCGGGGCGAAGCCGGTGCCTACCTCAACGGCTGGGATCCGCTGCTG CAGCAGGGACTTCCGCAACCGACGCTGGCTTGGCTCGACGACATCGCGCCCGACGGCCCGCTGGTGATCATCCACAACTC CGGGCACAAGGCGTTCTTCAACTCCCGAGCCGCCCAGCGGCACGGCCTGAACCGCGACACCCCCGACCCCAAGGGCGCCC GCTACGGCCGCGACGCGGACGGCGAACTCGACGGCACCGCCGAGGAGACCGGCGCGGTGTTTCCGCTACTCGACGGCGCC ATCGACACCGCTGGCTACCCGCGGATGCTGCACGCCGAGTGCGCCCGGCTGAACCGGGCCGGGCTGACCACCTGTTCGGA GATGGCGTTCGACCCGCGGTTTCGGCCGCTGGTCGAACAACTGCGCGGGCAGCTGACGGTGCGGCTGCGCAGCTACGAGA TCTCCAACCCGCAGCTGCGCACCGACGCCACCCTGGGCGAGGGCGACGACATGCTGCGCCAGGTCGGCATCAAGATCTGG GTGGACGGCTCGCCCTGGATCGGCAACATCGCGCTGTCGTTCCCCTACCTGGACACCGAGGCCACCCGCACCATCGGCGT CATCCCCGGCTCCTGCGGCTGCGCCAACTACACGACGGAGCAGTTGCACGAGATCGTCAGCGCCTACTTCCCGCTGGGCT GGCAGCTGGCCTGCCACGTGCAGGGCGACGCCGGCGTCGACACGATCCTGGACGTCTACGAGGAGGCCCTCAAACGCCAT CCGCGCGACGACCACCGGCTGCGGCTCGAGCACGTCGGCGCCATCCGGCCCGATCAACTCCAAAGGGCCGCCGACCTCGG CGTCACCTGCAGCATCTTCGTCGACCAGATCCACTACTGGGGCGACGTCCTCGTCGACGGCCTGTTCGGCGAGGAACGCG GATCCCGTTGGATGCCAGCGGGTTCCGCGGTGGCCACCGGCATGCGCATCTCGCTGCACAACGACCCGCCGGTCACCCCG GAGGAGCCGCTGCGCAACATCAGCGTCGCCGCCACCCGGAAGGCGCCCAGTGGGCGGGTGCTGGCGCCCGAGGAGCGGCT GACGGTCGAGCAGGCGATCCGGGCGCAGACCCTCGACGCGGCCTGGCAGCTGTTCGCCGACGACGTGATCGGCTCGCTCG AGGTCGGCAAGTACGCCGACCTGGTGGTGCTGTCCGCCGACCCGCGCGCGGTGCCGCCCGAGCGGATCGCCGACCTGCAG GTGCGGGCGACGTATCTGGCCGGCCGCCGGGTGTACCCACAGTGA
Upstream 100 bases:
>100_bases GGTGTCGCCGAGATGCAGCACCGGCTTGTCTTTGTTGCGCTTGAGCGCACCGACGGTCAGGTGTCCGGAATGAATGGGAT GGCGCAGCAGCTCGTCACCC
Downstream 100 bases:
>100_bases TTCCGCCGCTGCAGGACCTGCTGGACCGGCTGCACGTGGTCGCGCTGCCGATGCGGGTGCGATTCCGCGGCATCACCACC CGCGAGGTCGCGCTGATCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 574; Mature: 573
Protein sequence:
>574_residues MAWLLLIAWLCIVAGATHGARLERVAIPVSRTLGPIASVHMGQADLVLTGTVLTVDEARPTAEALAVADGRIVAVGTRAE IAAHVGPHTQTVDIGDGCVMPGFVEAHGHPLMEAVALSDRIVDIRPVTLANADDVVAAVKSEVGKRGEAGAYLNGWDPLL QQGLPQPTLAWLDDIAPDGPLVIIHNSGHKAFFNSRAAQRHGLNRDTPDPKGARYGRDADGELDGTAEETGAVFPLLDGA IDTAGYPRMLHAECARLNRAGLTTCSEMAFDPRFRPLVEQLRGQLTVRLRSYEISNPQLRTDATLGEGDDMLRQVGIKIW VDGSPWIGNIALSFPYLDTEATRTIGVIPGSCGCANYTTEQLHEIVSAYFPLGWQLACHVQGDAGVDTILDVYEEALKRH PRDDHRLRLEHVGAIRPDQLQRAADLGVTCSIFVDQIHYWGDVLVDGLFGEERGSRWMPAGSAVATGMRISLHNDPPVTP EEPLRNISVAATRKAPSGRVLAPEERLTVEQAIRAQTLDAAWQLFADDVIGSLEVGKYADLVVLSADPRAVPPERIADLQ VRATYLAGRRVYPQ
Sequences:
>Translated_574_residues MAWLLLIAWLCIVAGATHGARLERVAIPVSRTLGPIASVHMGQADLVLTGTVLTVDEARPTAEALAVADGRIVAVGTRAE IAAHVGPHTQTVDIGDGCVMPGFVEAHGHPLMEAVALSDRIVDIRPVTLANADDVVAAVKSEVGKRGEAGAYLNGWDPLL QQGLPQPTLAWLDDIAPDGPLVIIHNSGHKAFFNSRAAQRHGLNRDTPDPKGARYGRDADGELDGTAEETGAVFPLLDGA IDTAGYPRMLHAECARLNRAGLTTCSEMAFDPRFRPLVEQLRGQLTVRLRSYEISNPQLRTDATLGEGDDMLRQVGIKIW VDGSPWIGNIALSFPYLDTEATRTIGVIPGSCGCANYTTEQLHEIVSAYFPLGWQLACHVQGDAGVDTILDVYEEALKRH PRDDHRLRLEHVGAIRPDQLQRAADLGVTCSIFVDQIHYWGDVLVDGLFGEERGSRWMPAGSAVATGMRISLHNDPPVTP EEPLRNISVAATRKAPSGRVLAPEERLTVEQAIRAQTLDAAWQLFADDVIGSLEVGKYADLVVLSADPRAVPPERIADLQ VRATYLAGRRVYPQ >Mature_573_residues AWLLLIAWLCIVAGATHGARLERVAIPVSRTLGPIASVHMGQADLVLTGTVLTVDEARPTAEALAVADGRIVAVGTRAEI AAHVGPHTQTVDIGDGCVMPGFVEAHGHPLMEAVALSDRIVDIRPVTLANADDVVAAVKSEVGKRGEAGAYLNGWDPLLQ QGLPQPTLAWLDDIAPDGPLVIIHNSGHKAFFNSRAAQRHGLNRDTPDPKGARYGRDADGELDGTAEETGAVFPLLDGAI DTAGYPRMLHAECARLNRAGLTTCSEMAFDPRFRPLVEQLRGQLTVRLRSYEISNPQLRTDATLGEGDDMLRQVGIKIWV DGSPWIGNIALSFPYLDTEATRTIGVIPGSCGCANYTTEQLHEIVSAYFPLGWQLACHVQGDAGVDTILDVYEEALKRHP RDDHRLRLEHVGAIRPDQLQRAADLGVTCSIFVDQIHYWGDVLVDGLFGEERGSRWMPAGSAVATGMRISLHNDPPVTPE EPLRNISVAATRKAPSGRVLAPEERLTVEQAIRAQTLDAAWQLFADDVIGSLEVGKYADLVVLSADPRAVPPERIADLQV RATYLAGRRVYPQ
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 62009; Mature: 61878
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWLLLIAWLCIVAGATHGARLERVAIPVSRTLGPIASVHMGQADLVLTGTVLTVDEARP CHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHCCHHHHCCCCCCEEEEEEEEEECCCCC TAEALAVADGRIVAVGTRAEIAAHVGPHTQTVDIGDGCVMPGFVEAHGHPLMEAVALSDR CHHHHEECCCEEEEEECHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHHCC IVDIRPVTLANADDVVAAVKSEVGKRGEAGAYLNGWDPLLQQGLPQPTLAWLDDIAPDGP EEEEEEEEECCCHHHHHHHHHHHCCCCCCCCEECCCHHHHHCCCCCCHHHHHHHCCCCCC LVIIHNSGHKAFFNSRAAQRHGLNRDTPDPKGARYGRDADGELDGTAEETGAVFPLLDGA EEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCC IDTAGYPRMLHAECARLNRAGLTTCSEMAFDPRFRPLVEQLRGQLTVRLRSYEISNPQLR CCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHCCCEEEEEEEEECCCCCEE TDATLGEGDDMLRQVGIKIWVDGSPWIGNIALSFPYLDTEATRTIGVIPGSCGCANYTTE CCCCCCCCHHHHHHCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCHH QLHEIVSAYFPLGWQLACHVQGDAGVDTILDVYEEALKRHPRDDHRLRLEHVGAIRPDQL HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCCHHHH QRAADLGVTCSIFVDQIHYWGDVLVDGLFGEERGSRWMPAGSAVATGMRISLHNDPPVTP HHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEECCCCCCCH EEPLRNISVAATRKAPSGRVLAPEERLTVEQAIRAQTLDAAWQLFADDVIGSLEVGKYAD HHHHHCCEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LVVLSADPRAVPPERIADLQVRATYLAGRRVYPQ EEEECCCCCCCCHHHHHCCEEEEEEEECCCCCCC >Mature Secondary Structure AWLLLIAWLCIVAGATHGARLERVAIPVSRTLGPIASVHMGQADLVLTGTVLTVDEARP HHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHCCHHHHCCCCCCEEEEEEEEEECCCCC TAEALAVADGRIVAVGTRAEIAAHVGPHTQTVDIGDGCVMPGFVEAHGHPLMEAVALSDR CHHHHEECCCEEEEEECHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHHCC IVDIRPVTLANADDVVAAVKSEVGKRGEAGAYLNGWDPLLQQGLPQPTLAWLDDIAPDGP EEEEEEEEECCCHHHHHHHHHHHCCCCCCCCEECCCHHHHHCCCCCCHHHHHHHCCCCCC LVIIHNSGHKAFFNSRAAQRHGLNRDTPDPKGARYGRDADGELDGTAEETGAVFPLLDGA EEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCC IDTAGYPRMLHAECARLNRAGLTTCSEMAFDPRFRPLVEQLRGQLTVRLRSYEISNPQLR CCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHCCCEEEEEEEEECCCCCEE TDATLGEGDDMLRQVGIKIWVDGSPWIGNIALSFPYLDTEATRTIGVIPGSCGCANYTTE CCCCCCCCHHHHHHCCEEEEECCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCHH QLHEIVSAYFPLGWQLACHVQGDAGVDTILDVYEEALKRHPRDDHRLRLEHVGAIRPDQL HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCCHHHH QRAADLGVTCSIFVDQIHYWGDVLVDGLFGEERGSRWMPAGSAVATGMRISLHNDPPVTP HHHHHCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCEEEEECCCCCCCH EEPLRNISVAATRKAPSGRVLAPEERLTVEQAIRAQTLDAAWQLFADDVIGSLEVGKYAD HHHHHCCEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC LVVLSADPRAVPPERIADLQVRATYLAGRRVYPQ EEEECCCCCCCCHHHHHCCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA