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The map label for this gene is deoC

Identifier: 41410069

GI number: 41410069

Start: 4429887

End: 4430558

Strand: Direct

Name: deoC

Synonym: MAP3971

Alternate gene names: 41410069

Gene position: 4429887-4430558 (Clockwise)

Preceding gene: 41410068

Following gene: 41410073

Centisome position: 91.72

GC content: 75.45

Gene sequence:

>672_bases
ATGACCCCCACCCGCGCCCAGCTGGCGGCATTCGTCGACCACACCCTGCTCAAGCCCGAAGCCACCGCCGCCGACGTCGC
CGCCCTGGTCACCGAGGCGGCCGAGCTGGGCGTCTACGCGGTGTGCGTCTCGCCGACGATGGTTCCCGCCGCCGTGCAGG
CCGGTGCCGGCGTGCGGGTGGCCAGCGTGGCGGGATTCCCGTCGGGCAAGCATGTGTCGGCCGTCAAGGCCCACGAGGCC
GCGCTGGCGGTGGCCTCCGGCGCCGCCGAGATCGACATGGTCATCGACGTCGGCGCGGCGCTGGCCGGTGACCTCGACGG
GGTGCGCGCCGACATCGCGGCGGTGCGCGACGCGGTCGGCGGCGCCGTGCTCAAGGTGATCGTGGAGTCGTCAGCGCTGC
TGGCGCTGGCCGACGAGCACACCCTGGTCCGGGTGTGCCGCGCCGCCGAGGACGCCGGCGCCGACTTCGTCAAGACGTCG
ACCGGATTCCACCCGACCGGCGGCGCATCCGTGCGGGCGGTCGCCCTGATGGCCGAGGCGGTCGGGGGCCGGCTGGGGGT
GAAGGCCAGCGGCGGCATCCGCACCGCCGCCGATGCGCTGGCGATGCTGGATGCCGGCGCCACCCGGCTGGGATTGTCGG
GCACCCGGGCCGTGCTCGACGGGCTGGGCTGA

Upstream 100 bases:

>100_bases
GCAAGCTCAGCTGGAACCTGGAGCCGTGGCGCCCCGTCGTCGACGACGCGGAGATGGTCGCCTCCGGCTGCAATCCCGGC
GGACCGGAAGAATCCTTCGG

Downstream 100 bases:

>100_bases
GGACCGCCGGCGTCAGAGGTTGGCGAAGCAGGGGTCGTTGTTGTTGCCGGTCGGGATGGCGGCGTTGCGGGTGGAGAAGT
GGCTGGTCACACCCTTGTCG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTPTRAQLAAFVDHTLLKPEATAADVAALVTEAAELGVYAVCVSPTMVPAAVQAGAGVRVASVAGFPSGKHVSAVKAHEA
ALAVASGAAEIDMVIDVGAALAGDLDGVRADIAAVRDAVGGAVLKVIVESSALLALADEHTLVRVCRAAEDAGADFVKTS
TGFHPTGGASVRAVALMAEAVGGRLGVKASGGIRTAADALAMLDAGATRLGLSGTRAVLDGLG

Sequences:

>Translated_223_residues
MTPTRAQLAAFVDHTLLKPEATAADVAALVTEAAELGVYAVCVSPTMVPAAVQAGAGVRVASVAGFPSGKHVSAVKAHEA
ALAVASGAAEIDMVIDVGAALAGDLDGVRADIAAVRDAVGGAVLKVIVESSALLALADEHTLVRVCRAAEDAGADFVKTS
TGFHPTGGASVRAVALMAEAVGGRLGVKASGGIRTAADALAMLDAGATRLGLSGTRAVLDGLG
>Mature_222_residues
TPTRAQLAAFVDHTLLKPEATAADVAALVTEAAELGVYAVCVSPTMVPAAVQAGAGVRVASVAGFPSGKHVSAVKAHEAA
LAVASGAAEIDMVIDVGAALAGDLDGVRADIAAVRDAVGGAVLKVIVESSALLALADEHTLVRVCRAAEDAGADFVKTST
GFHPTGGASVRAVALMAEAVGGRLGVKASGGIRTAADALAMLDAGATRLGLSGTRAVLDGLG

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=243, Percent_Identity=34.156378600823, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1790841, Length=208, Percent_Identity=31.7307692307692, Blast_Score=72, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17533015, Length=215, Percent_Identity=32.093023255814, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19922098, Length=196, Percent_Identity=32.6530612244898, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 21799; Mature: 21668

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTRAQLAAFVDHTLLKPEATAADVAALVTEAAELGVYAVCVSPTMVPAAVQAGAGVRV
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHCCCCEEE
ASVAGFPSGKHVSAVKAHEAALAVASGAAEIDMVIDVGAALAGDLDGVRADIAAVRDAVG
EEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEHEEEHHHHHHCCCCHHHHHHHHHHHHHH
GAVLKVIVESSALLALADEHTLVRVCRAAEDAGADFVKTSTGFHPTGGASVRAVALMAEA
HHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHH
VGGRLGVKASGGIRTAADALAMLDAGATRLGLSGTRAVLDGLG
HCCCCCEECCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHCCCC
>Mature Secondary Structure 
TPTRAQLAAFVDHTLLKPEATAADVAALVTEAAELGVYAVCVSPTMVPAAVQAGAGVRV
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHCCCCEEE
ASVAGFPSGKHVSAVKAHEAALAVASGAAEIDMVIDVGAALAGDLDGVRADIAAVRDAVG
EEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEHEEEHHHHHHCCCCHHHHHHHHHHHHHH
GAVLKVIVESSALLALADEHTLVRVCRAAEDAGADFVKTSTGFHPTGGASVRAVALMAEA
HHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHH
VGGRLGVKASGGIRTAADALAMLDAGATRLGLSGTRAVLDGLG
HCCCCCEECCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA