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The map label for this gene is ybdK [C]

Identifier: 41410020

GI number: 41410020

Start: 4382338

End: 4383504

Strand: Direct

Name: ybdK [C]

Synonym: MAP3922

Alternate gene names: 41410020

Gene position: 4382338-4383504 (Clockwise)

Preceding gene: 41410019

Following gene: 41410021

Centisome position: 90.74

GC content: 68.98

Gene sequence:

>1167_bases
GTGACGCCGGCAAGCGGGTGGCGTGCGGTGTCATCGGTGCCGGCTAGACGGGGCGACGCGCACATCGATTTCGCCCGTTC
GCCGCGGCCGACCATCGGGGTGGAGTGGGAGTTCGCGCTCGTCGACGCGCAGACCCGCGACCTGAGCAACGAGGCCACCG
CGGTGATCGCCGAGATCGGCGAAAACCCGCGCGTGCACAAGGAATTGCTGCGCAACACCGTCGAGGTGGTCAGCGGCATC
TGCCGGACCGTGCCCGAGGCGATGGAGGATCTGCGGCAGACCCTGGGGCCCGCGCGCCGGATCGTGCGGGACCGCGGCAT
GGAACTGTTCTGCGCCGGCGCACATCCGTTCGCGCAGTGGACGACCCAGAAGCTCACCGACGCCCCCCGCTACGCCGAGT
TGATCAAGCGCACCCAGTGGTGGGGACGGCAGATGCTGATCTGGGGGGTGCACGTGCACGTCGGGATCTCCTCGCCGAAC
AAGGTGATGCCGATCATGACGTCGCTGCTGAACTACTACCCGCACCTGCTGGCGCTGTCGGCGTCCTCGCCGTGGTGGAC
CGGGGTGGACACGGGCTACGCCAGCAACCGGGCGATGATGTTCCAGCAGCTGCCCACCGCCGGGCTGCCGTTCCAGTTTC
AGACCTGGGCGGAGTTCGAGGGCTTCGTCTACGACCAGAAGAAGACCGGCATCATCGACCACGTCGACGAAGTCCGTTGG
GACATCAGGCCGTCCCCGCACCTGGGCACGCTGGAGATGCGGATCTGCGACGGCGTGTCCAACCTGCACGAGCTGGCCGC
GCTGGTGGCGCTGACGCACTGCCTGGTGGTCGACCTGGACCGCAGGCTGGAGGCCGACGAGTCGTTGCCGACCATGCCGC
CCTGGCATCACCAGGAGAACAAGTGGCGCGCCGCCCGCTACGGCCTGGACGCGGTGATCATCCTGGACGCCGACAGCAAC
GAACGCCTGGTCACCGAGGACCTCGACGACGTGCTCAACCGGCTGGAGCCGGTCGCCCGCAAGCTGCAGTGCGCCGACGA
GCTGGCCGCGGTGGCCGACATCCCCCGCCACGGCGCGTCATACCAGCGTCAGCGCCGGGTGGCCGAGGAACACGACGGCG
ACCTGCGCGCGGTCGTCGACGCGCTGGTCGCCGAGCTGGAGATCTGA

Upstream 100 bases:

>100_bases
ATCATCCACGCCGGCGCGGACAACTTCGCCAACATCCCGGCGGAGCGCTACAACCAGACCAACGGAACACCGGGCCCCGA
CGAGATGACGATGAGCACCG

Downstream 100 bases:

>100_bases
TGACCGAACCCGTTGCGCTGCCGATGTTTCCGCTGGAGTCGGCGCTGCTGCCCGACCAGGACCTGCCGTTGCGGATCTTC
GAGCCCCGCTACGGCGCGCT

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MTPASGWRAVSSVPARRGDAHIDFARSPRPTIGVEWEFALVDAQTRDLSNEATAVIAEIGENPRVHKELLRNTVEVVSGI
CRTVPEAMEDLRQTLGPARRIVRDRGMELFCAGAHPFAQWTTQKLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGISSPN
KVMPIMTSLLNYYPHLLALSASSPWWTGVDTGYASNRAMMFQQLPTAGLPFQFQTWAEFEGFVYDQKKTGIIDHVDEVRW
DIRPSPHLGTLEMRICDGVSNLHELAALVALTHCLVVDLDRRLEADESLPTMPPWHHQENKWRAARYGLDAVIILDADSN
ERLVTEDLDDVLNRLEPVARKLQCADELAAVADIPRHGASYQRQRRVAEEHDGDLRAVVDALVAELEI

Sequences:

>Translated_388_residues
MTPASGWRAVSSVPARRGDAHIDFARSPRPTIGVEWEFALVDAQTRDLSNEATAVIAEIGENPRVHKELLRNTVEVVSGI
CRTVPEAMEDLRQTLGPARRIVRDRGMELFCAGAHPFAQWTTQKLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGISSPN
KVMPIMTSLLNYYPHLLALSASSPWWTGVDTGYASNRAMMFQQLPTAGLPFQFQTWAEFEGFVYDQKKTGIIDHVDEVRW
DIRPSPHLGTLEMRICDGVSNLHELAALVALTHCLVVDLDRRLEADESLPTMPPWHHQENKWRAARYGLDAVIILDADSN
ERLVTEDLDDVLNRLEPVARKLQCADELAAVADIPRHGASYQRQRRVAEEHDGDLRAVVDALVAELEI
>Mature_387_residues
TPASGWRAVSSVPARRGDAHIDFARSPRPTIGVEWEFALVDAQTRDLSNEATAVIAEIGENPRVHKELLRNTVEVVSGIC
RTVPEAMEDLRQTLGPARRIVRDRGMELFCAGAHPFAQWTTQKLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGISSPNK
VMPIMTSLLNYYPHLLALSASSPWWTGVDTGYASNRAMMFQQLPTAGLPFQFQTWAEFEGFVYDQKKTGIIDHVDEVRWD
IRPSPHLGTLEMRICDGVSNLHELAALVALTHCLVVDLDRRLEADESLPTMPPWHHQENKWRAARYGLDAVIILDADSNE
RLVTEDLDDVLNRLEPVARKLQCADELAAVADIPRHGASYQRQRRVAEEHDGDLRAVVDALVAELEI

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=341, Percent_Identity=29.3255131964809, Blast_Score=168, Evalue=7e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 43752; Mature: 43621

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPASGWRAVSSVPARRGDAHIDFARSPRPTIGVEWEFALVDAQTRDLSNEATAVIAEIG
CCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHC
ENPRVHKELLRNTVEVVSGICRTVPEAMEDLRQTLGPARRIVRDRGMELFCAGAHPFAQW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
TTQKLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGISSPNKVMPIMTSLLNYYPHLLALS
HHHHHCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEE
ASSPWWTGVDTGYASNRAMMFQQLPTAGLPFQFQTWAEFEGFVYDQKKTGIIDHVDEVRW
CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEECCHHCCCCEEECCCCCCHHHHHHHHHC
DIRPSPHLGTLEMRICDGVSNLHELAALVALTHCLVVDLDRRLEADESLPTMPPWHHQEN
CCCCCCCCCEEHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
KWRAARYGLDAVIILDADSNERLVTEDLDDVLNRLEPVARKLQCADELAAVADIPRHGAS
CHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
YQRQRRVAEEHDGDLRAVVDALVAELEI
HHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPASGWRAVSSVPARRGDAHIDFARSPRPTIGVEWEFALVDAQTRDLSNEATAVIAEIG
CCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEEECCHHHCCCHHHHHHHHHHC
ENPRVHKELLRNTVEVVSGICRTVPEAMEDLRQTLGPARRIVRDRGMELFCAGAHPFAQW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
TTQKLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGISSPNKVMPIMTSLLNYYPHLLALS
HHHHHCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEE
ASSPWWTGVDTGYASNRAMMFQQLPTAGLPFQFQTWAEFEGFVYDQKKTGIIDHVDEVRW
CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEECCHHCCCCEEECCCCCCHHHHHHHHHC
DIRPSPHLGTLEMRICDGVSNLHELAALVALTHCLVVDLDRRLEADESLPTMPPWHHQEN
CCCCCCCCCEEHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
KWRAARYGLDAVIILDADSNERLVTEDLDDVLNRLEPVARKLQCADELAAVADIPRHGAS
CHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
YQRQRRVAEEHDGDLRAVVDALVAELEI
HHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA