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The map label for this gene is sodC

Identifier: 41410019

GI number: 41410019

Start: 4381701

End: 4382384

Strand: Direct

Name: sodC

Synonym: MAP3921

Alternate gene names: 41410019

Gene position: 4381701-4382384 (Clockwise)

Preceding gene: 41410018

Following gene: 41410020

Centisome position: 90.72

GC content: 71.78

Gene sequence:

>684_bases
ATGCCCAAGCTGCTGCCTCCCGTGGTTCTGGCCGGTTGCGTCGTGGCGCTGGGCGCCTGTTCGTCGCCCCAGCACGCGTC
GTCGCTGCCGGGTACCACCCCCGCGGTGTGGACCGGATCGCCGTCGCCGTCGGGCGCGGGCGCAGCCGAGGCCGCGCCGG
CCGCGGCGCCCAGCATCACCACCCACCTCAAGGCGCCGGACGGCACCCAGGTCGCGACCGCGAAGTTCGAGTTCAGCAAC
GGCTACGCCACCGTCACCATCGAGACGACGGCCAACGGCGTGCTCACGCCCGGCTTCCACGGGGTGCACATCCACAAGGT
CGGCAAGTGCGAACCCAGCTCGGTCGCCCCGACCGGCGGCGCCCCGGGGGACTTCCTGTCCGCCGGAGGGCATTTCCAGG
CGCCCGGGCACACCGGCGAACCCGCCAGCGGCGACCTGACCTCGCTGCAGGTGCGCAAGGACGGCTCCGGGACGCTGGTG
ACCACCACCGACGCCTTCACCATGGAGGATCTGCTCGGCGGGCGGAAGACGGCGATCATCATCCACGCCGGCGCGGACAA
CTTCGCCAACATCCCGGCGGAGCGCTACAACCAGACCAACGGAACACCGGGCCCCGACGAGATGACGATGAGCACCGGTG
ACGCCGGCAAGCGGGTGGCGTGCGGTGTCATCGGTGCCGGCTAG

Upstream 100 bases:

>100_bases
GCCGGTCGAGCCGCGCATCCCCGCGCTGAGCGGCCAACCCCCGGGTGTCATCGTCCTCGTCGCGGGCTGAGCGGGCCGGC
GAAGCGTTAGGCTGCTGGCT

Downstream 100 bases:

>100_bases
ACGGGGCGACGCGCACATCGATTTCGCCCGTTCGCCGCGGCCGACCATCGGGGTGGAGTGGGAGTTCGCGCTCGTCGACG
CGCAGACCCGCGACCTGAGC

Product: SodC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPKLLPPVVLAGCVVALGACSSPQHASSLPGTTPAVWTGSPSPSGAGAAEAAPAAAPSITTHLKAPDGTQVATAKFEFSN
GYATVTIETTANGVLTPGFHGVHIHKVGKCEPSSVAPTGGAPGDFLSAGGHFQAPGHTGEPASGDLTSLQVRKDGSGTLV
TTTDAFTMEDLLGGRKTAIIIHAGADNFANIPAERYNQTNGTPGPDEMTMSTGDAGKRVACGVIGAG

Sequences:

>Translated_227_residues
MPKLLPPVVLAGCVVALGACSSPQHASSLPGTTPAVWTGSPSPSGAGAAEAAPAAAPSITTHLKAPDGTQVATAKFEFSN
GYATVTIETTANGVLTPGFHGVHIHKVGKCEPSSVAPTGGAPGDFLSAGGHFQAPGHTGEPASGDLTSLQVRKDGSGTLV
TTTDAFTMEDLLGGRKTAIIIHAGADNFANIPAERYNQTNGTPGPDEMTMSTGDAGKRVACGVIGAG
>Mature_226_residues
PKLLPPVVLAGCVVALGACSSPQHASSLPGTTPAVWTGSPSPSGAGAAEAAPAAAPSITTHLKAPDGTQVATAKFEFSNG
YATVTIETTANGVLTPGFHGVHIHKVGKCEPSSVAPTGGAPGDFLSAGGHFQAPGHTGEPASGDLTSLQVRKDGSGTLVT
TTDAFTMEDLLGGRKTAIIIHAGADNFANIPAERYNQTNGTPGPDEMTMSTGDAGKRVACGVIGAG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May play a role in favoring mycobacterial survival in phagocytes

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SODC_MYCPA (Q9AGW2)

Other databases:

- EMBL:   AF326234
- EMBL:   AE016958
- RefSeq:   NP_962855.1
- ProteinModelPortal:   Q9AGW2
- SMR:   Q9AGW2
- EnsemblBacteria:   EBMYCT00000036225
- GeneID:   2719337
- GenomeReviews:   AE016958_GR
- KEGG:   mpa:MAP3921
- NMPDR:   fig|262316.1.peg.3921
- GeneTree:   EBGT00050000014902
- HOGENOM:   HBG609879
- OMA:   RYNQTNG
- ProtClustDB:   CLSK790516
- BRENDA:   1.15.1.1
- InterPro:   IPR018152
- InterPro:   IPR001424
- Gene3D:   G3DSA:2.60.40.200
- PANTHER:   PTHR10003
- PRINTS:   PR00068

Pfam domain/function: PF00080 Sod_Cu; SSF49329 SOD_Cu_Zn

EC number: =1.15.1.1

Molecular weight: Translated: 22466; Mature: 22335

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00087 SOD_CU_ZN_1; PS00332 SOD_CU_ZN_2; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLLPPVVLAGCVVALGACSSPQHASSLPGTTPAVWTGSPSPSGAGAAEAAPAAAPSIT
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEE
THLKAPDGTQVATAKFEFSNGYATVTIETTANGVLTPGFHGVHIHKVGKCEPSSVAPTGG
EEEECCCCCEEEEEEEEECCCEEEEEEEECCCCEECCCCCCEEEEEECCCCCCCCCCCCC
APGDFLSAGGHFQAPGHTGEPASGDLTSLQVRKDGSGTLVTTTDAFTMEDLLGGRKTAII
CCHHHHCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCEEHHHHHCCCEEEEE
IHAGADNFANIPAERYNQTNGTPGPDEMTMSTGDAGKRVACGVIGAG
EECCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCEEEEEEECCC
>Mature Secondary Structure 
PKLLPPVVLAGCVVALGACSSPQHASSLPGTTPAVWTGSPSPSGAGAAEAAPAAAPSIT
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEE
THLKAPDGTQVATAKFEFSNGYATVTIETTANGVLTPGFHGVHIHKVGKCEPSSVAPTGG
EEEECCCCCEEEEEEEEECCCEEEEEEEECCCCEECCCCCCEEEEEECCCCCCCCCCCCC
APGDFLSAGGHFQAPGHTGEPASGDLTSLQVRKDGSGTLVTTTDAFTMEDLLGGRKTAII
CCHHHHCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCEEHHHHHCCCEEEEE
IHAGADNFANIPAERYNQTNGTPGPDEMTMSTGDAGKRVACGVIGAG
EECCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11549243