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The map label for this gene is 41409989

Identifier: 41409989

GI number: 41409989

Start: 4355123

End: 4355755

Strand: Direct

Name: 41409989

Synonym: MAP3891

Alternate gene names: NA

Gene position: 4355123-4355755 (Clockwise)

Preceding gene: 41409988

Following gene: 41409990

Centisome position: 90.17

GC content: 69.67

Gene sequence:

>633_bases
GTGGGGCAGCCGCAATCGCAGATGGAGCCGGAATCCAAGCTTCGCCAGCGCACCGAGGGGCGACTCGATCGCTCGCGCGA
CCCCGCGATCCTCGATGCCGCGTTGGCGGCGCTGGCCGAACACGGCTATGACGCGACGAACATGAACGACATCGCCGCGC
GGGCCGGCGTCGGCAAGGCAGCGATCTACCGGCGGTGGTCGTCGAAGGCCGCGTTGATGACCGACGCCCTGATCTACTGG
CGGCCCGAGCTCCTCAACGACGACGCGCCCGACACCGGGAGCCTGGCCGGCGACCTCGACGCGATCGTCAAGCGCGCCAA
GCGCAACGACAACGCGTTGATCTCCAACGACCTCGTGTTGCGGGTCGCCTTGGAGGCCGCGCACGATCCCGAGCTCGCCA
CCGCGCTGAACGACCTGATCCTGTTCAAGGGCCGACGGGTGCTGTCGGCCGTTCTGGCGCAGGCCGCCGACCGCGGGGAA
ATCGACCCGAACCGCGACTGGTCGTTGGTCGCCGACGTGTTGACCGCGATGGGCCTGCTGCGCGCCATCAGCGGGCAGCG
CGTCGACGGCAAGTTCGTGCGGCGGGTCATCGACACCCTGATCCTGCCCGCCGTGCGGGCGGCACCCGAATAG

Upstream 100 bases:

>100_bases
TCTGGTGGCCGATCAACACCATCCGCATGACCCGACGCACACACCACGACGAGGAGGCACACACGGCGCCGATCCGGCAG
CCGGCTCTAAGGTGAACTGC

Downstream 100 bases:

>100_bases
CTATCGCGGCCTGTGCACAGCCGCAGTCGCGGTCGCCGCCGGCGTGCCAGGGTTTCTCGTATGGGGGAGACGCCGGTCGT
CGGCAGCGAGGAACTGGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MGQPQSQMEPESKLRQRTEGRLDRSRDPAILDAALAALAEHGYDATNMNDIAARAGVGKAAIYRRWSSKAALMTDALIYW
RPELLNDDAPDTGSLAGDLDAIVKRAKRNDNALISNDLVLRVALEAAHDPELATALNDLILFKGRRVLSAVLAQAADRGE
IDPNRDWSLVADVLTAMGLLRAISGQRVDGKFVRRVIDTLILPAVRAAPE

Sequences:

>Translated_210_residues
MGQPQSQMEPESKLRQRTEGRLDRSRDPAILDAALAALAEHGYDATNMNDIAARAGVGKAAIYRRWSSKAALMTDALIYW
RPELLNDDAPDTGSLAGDLDAIVKRAKRNDNALISNDLVLRVALEAAHDPELATALNDLILFKGRRVLSAVLAQAADRGE
IDPNRDWSLVADVLTAMGLLRAISGQRVDGKFVRRVIDTLILPAVRAAPE
>Mature_209_residues
GQPQSQMEPESKLRQRTEGRLDRSRDPAILDAALAALAEHGYDATNMNDIAARAGVGKAAIYRRWSSKAALMTDALIYWR
PELLNDDAPDTGSLAGDLDAIVKRAKRNDNALISNDLVLRVALEAAHDPELATALNDLILFKGRRVLSAVLAQAADRGEI
DPNRDWSLVADVLTAMGLLRAISGQRVDGKFVRRVIDTLILPAVRAAPE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22843; Mature: 22712

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQPQSQMEPESKLRQRTEGRLDRSRDPAILDAALAALAEHGYDATNMNDIAARAGVGKA
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHH
AIYRRWSSKAALMTDALIYWRPELLNDDAPDTGSLAGDLDAIVKRAKRNDNALISNDLVL
HHHHHHCCCHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCHHHH
RVALEAAHDPELATALNDLILFKGRRVLSAVLAQAADRGEIDPNRDWSLVADVLTAMGLL
HHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
RAISGQRVDGKFVRRVIDTLILPAVRAAPE
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GQPQSQMEPESKLRQRTEGRLDRSRDPAILDAALAALAEHGYDATNMNDIAARAGVGKA
CCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHH
AIYRRWSSKAALMTDALIYWRPELLNDDAPDTGSLAGDLDAIVKRAKRNDNALISNDLVL
HHHHHHCCCHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCHHHH
RVALEAAHDPELATALNDLILFKGRRVLSAVLAQAADRGEIDPNRDWSLVADVLTAMGLL
HHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
RAISGQRVDGKFVRRVIDTLILPAVRAAPE
HHHCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]