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The map label for this gene is IS1086 [H]

Identifier: 41409952

GI number: 41409952

Start: 4316758

End: 4318032

Strand: Direct

Name: IS1086 [H]

Synonym: MAP3854

Alternate gene names: 41409952

Gene position: 4316758-4318032 (Clockwise)

Preceding gene: 41409951

Following gene: 41409953

Centisome position: 89.38

GC content: 64.63

Gene sequence:

>1275_bases
ATGCAACAGCCTCTAGCTGAGGGGTTGTTGATGAGGTCGTCGCGGTATGCCGTTGTGGGTCGTCGGTTCTGGGAATTGGT
GCGGGCCGGAATGTCTGCGGATGACGCTGGGGTGGCTGTCGGCGTGTCGATGGCCGCAGGGCGGCTCTGGTTTGCTGATG
CTGGCGGAGTGAGACCACGATTCGTCGACCAGTCCATCCCGCGACGGCGTCCTCGGTTGACGGTGGAGGAACGCGAGGAG
ATCCAAGACGGTGTGGCTCGCAGCGAGTCCATCCGTGTGATCGCTCGCCGACTGGGCCGGCATCCGTCGACGGTGATGCG
TGAGATCGAGCGCAACGCGATCTGTCGTGGCCGGTATCGGGCGCGGTATCGATTCGGGGTGCGCTGGCGTGGTGGTCACG
ATCCCCGGCCGCGATATCGCGCCAGCTTGGCGCACACGCGTGCGCACGTTAAGGCGCGCCGTTCGCGGCCCGGCAAGCTG
GCGACCAATCAGCTGCTCCACGACGAGGTACAGACGCGGTTGAATGAGCAGCACAGCCCGCAGCAGATCGCTTGGCGGCT
GCGGCGCGACTTTCCCGACGATGCGGAGATGTGGGTGTCTCAAGAGACGATCTATCAAGCGATTTACGTTCAGGGCAAAG
GGAATTTGCGACGTGAGTTGCACACCTGCTTGCGTACCGGGCGGGCCCTGCGCAAGCCTCGGCGTCGTCCTGGTGAGCGT
CGCGGACACCTGCGCGACATGGTCAACATCAGCGAGCGCCCCCCTGAGGTCGCCGACCGCGCCGTGCCCGGACACTGGGA
AGGCGATCTCATCCTGGGTAGCACCGCGTCGGGTTCGGCGATCGGCACGGTGGTCGAACGAACGACGCGGTTCGTGATGC
TGCTACACCTGCCCGACGGGCATGGCGCCGAGGCGGTGCAGGAGGCCATCGTCGCCAAGATGGCCGGACTGCCGGCGACC
CTGCGCCAGACCCTGACGTGGGACCAGGGCAAGGAGATGGCCAACCACGCCGCGATCGCAGCGGCCACCGAACTGGACAT
CTACTTCTGCGATCCACACTCGCCGTGGCAGCGTGGCACCAACGAGAACACCAACGGGCTGCTTCGCCAGTACTTTGCCA
AGGGCACCGACCTCTCGGCGTTCCCGGCCGACTATCTCGACTACGTGGCATCCAAACTCAACCGCAGGCCACGACAGACA
CTCGACTGGAAAACACCAGCCGAAGCCCTCGATGAATTACTCTGCAAACCGTTCACACCACCGGCTGTTGCTTAG

Upstream 100 bases:

>100_bases
TCAACGTCAGCCCGGACGGCGACTCGCTGATCCTGGGCTAGTCGGTCGCGCGCGAACGTCGACTTGTTGCGGGGATTTCC
CTCTTACCTTCTAGCGCTGG

Downstream 100 bases:

>100_bases
AGCGCTAGAAAGCGCCCCTCGAAATCGCCCAACAAGTCGACGTTCGGCGCATTTAGTAATTTTGTTGTGACCTGGTCGCC
TTCTGTGTTCCCGCCCAATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MQQPLAEGLLMRSSRYAVVGRRFWELVRAGMSADDAGVAVGVSMAAGRLWFADAGGVRPRFVDQSIPRRRPRLTVEEREE
IQDGVARSESIRVIARRLGRHPSTVMREIERNAICRGRYRARYRFGVRWRGGHDPRPRYRASLAHTRAHVKARRSRPGKL
ATNQLLHDEVQTRLNEQHSPQQIAWRLRRDFPDDAEMWVSQETIYQAIYVQGKGNLRRELHTCLRTGRALRKPRRRPGER
RGHLRDMVNISERPPEVADRAVPGHWEGDLILGSTASGSAIGTVVERTTRFVMLLHLPDGHGAEAVQEAIVAKMAGLPAT
LRQTLTWDQGKEMANHAAIAAATELDIYFCDPHSPWQRGTNENTNGLLRQYFAKGTDLSAFPADYLDYVASKLNRRPRQT
LDWKTPAEALDELLCKPFTPPAVA

Sequences:

>Translated_424_residues
MQQPLAEGLLMRSSRYAVVGRRFWELVRAGMSADDAGVAVGVSMAAGRLWFADAGGVRPRFVDQSIPRRRPRLTVEEREE
IQDGVARSESIRVIARRLGRHPSTVMREIERNAICRGRYRARYRFGVRWRGGHDPRPRYRASLAHTRAHVKARRSRPGKL
ATNQLLHDEVQTRLNEQHSPQQIAWRLRRDFPDDAEMWVSQETIYQAIYVQGKGNLRRELHTCLRTGRALRKPRRRPGER
RGHLRDMVNISERPPEVADRAVPGHWEGDLILGSTASGSAIGTVVERTTRFVMLLHLPDGHGAEAVQEAIVAKMAGLPAT
LRQTLTWDQGKEMANHAAIAAATELDIYFCDPHSPWQRGTNENTNGLLRQYFAKGTDLSAFPADYLDYVASKLNRRPRQT
LDWKTPAEALDELLCKPFTPPAVA
>Mature_424_residues
MQQPLAEGLLMRSSRYAVVGRRFWELVRAGMSADDAGVAVGVSMAAGRLWFADAGGVRPRFVDQSIPRRRPRLTVEEREE
IQDGVARSESIRVIARRLGRHPSTVMREIERNAICRGRYRARYRFGVRWRGGHDPRPRYRASLAHTRAHVKARRSRPGKL
ATNQLLHDEVQTRLNEQHSPQQIAWRLRRDFPDDAEMWVSQETIYQAIYVQGKGNLRRELHTCLRTGRALRKPRRRPGER
RGHLRDMVNISERPPEVADRAVPGHWEGDLILGSTASGSAIGTVVERTTRFVMLLHLPDGHGAEAVQEAIVAKMAGLPAT
LRQTLTWDQGKEMANHAAIAAATELDIYFCDPHSPWQRGTNENTNGLLRQYFAKGTDLSAFPADYLDYVASKLNRRPRQT
LDWKTPAEALDELLCKPFTPPAVA

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG2826

COG function: function code L; Transposase and inactivated derivatives, IS30 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790736, Length=393, Percent_Identity=39.1857506361323, Blast_Score=242, Evalue=3e-65,
Organism=Escherichia coli, GI1787671, Length=393, Percent_Identity=39.1857506361323, Blast_Score=242, Evalue=3e-65,
Organism=Escherichia coli, GI1786450, Length=393, Percent_Identity=38.9312977099237, Blast_Score=241, Evalue=9e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 48059; Mature: 48059

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQPLAEGLLMRSSRYAVVGRRFWELVRAGMSADDAGVAVGVSMAAGRLWFADAGGVRPR
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHCCEEEEECCCCCCCH
FVDQSIPRRRPRLTVEEREEIQDGVARSESIRVIARRLGRHPSTVMREIERNAICRGRYR
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHH
ARYRFGVRWRGGHDPRPRYRASLAHTRAHVKARRSRPGKLATNQLLHDEVQTRLNEQHSP
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCH
QQIAWRLRRDFPDDAEMWVSQETIYQAIYVQGKGNLRRELHTCLRTGRALRKPRRRPGER
HHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHH
RGHLRDMVNISERPPEVADRAVPGHWEGDLILGSTASGSAIGTVVERTTRFVMLLHLPDG
HHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEEEEEEECCCC
HGAEAVQEAIVAKMAGLPATLRQTLTWDQGKEMANHAAIAAATELDIYFCDPHSPWQRGT
CCHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHEEEEEEEEEEECCCCHHHCCC
NENTNGLLRQYFAKGTDLSAFPADYLDYVASKLNRRPRQTLDWKTPAEALDELLCKPFTP
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
PAVA
CCCC
>Mature Secondary Structure
MQQPLAEGLLMRSSRYAVVGRRFWELVRAGMSADDAGVAVGVSMAAGRLWFADAGGVRPR
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHCCEEEEECCCCCCCH
FVDQSIPRRRPRLTVEEREEIQDGVARSESIRVIARRLGRHPSTVMREIERNAICRGRYR
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHH
ARYRFGVRWRGGHDPRPRYRASLAHTRAHVKARRSRPGKLATNQLLHDEVQTRLNEQHSP
EEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCH
QQIAWRLRRDFPDDAEMWVSQETIYQAIYVQGKGNLRRELHTCLRTGRALRKPRRRPGER
HHHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHH
RGHLRDMVNISERPPEVADRAVPGHWEGDLILGSTASGSAIGTVVERTTRFVMLLHLPDG
HHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEEEEEEECCCC
HGAEAVQEAIVAKMAGLPATLRQTLTWDQGKEMANHAAIAAATELDIYFCDPHSPWQRGT
CCHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHEEEEEEEEEEECCCCHHHCCC
NENTNGLLRQYFAKGTDLSAFPADYLDYVASKLNRRPRQTLDWKTPAEALDELLCKPFTP
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
PAVA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1334071 [H]