| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409718
Identifier: 41409718
GI number: 41409718
Start: 4017333
End: 4018736
Strand: Reverse
Name: 41409718
Synonym: MAP3620c
Alternate gene names: NA
Gene position: 4018736-4017333 (Counterclockwise)
Preceding gene: 41409719
Following gene: 41409716
Centisome position: 83.21
GC content: 69.94
Gene sequence:
>1404_bases ATGACGAGTTCCACCGTCGGGGTCACGCCGGTACCCGGCAACCCGCGGCTGTTGCTGAGCGCCTATGACCTTGCGACGGT CGGATACGTCGCCGAGGAGTTCTTCGTGTCCGCGACGGCGTCCCGTTACGGCCCGGCGGGCGAGCTGGGCGCCGACGGGT GCTGGGAGGTAATCCGTTGCGGCGCCGCCGATTTCACCACCCGGGTCGTGGTGCTGACGCCTGCCGACCCGGCCCGGTTC AACGGGACGGTGCTGGTGGAGTGGCTCAACGTGAGCGGCGGCATCGATGCCGCCGCGGTCTGGATGATGGCACACCGCGA GATCCTCCGCGCCGGTTACGCGTACGTCGCGGTGTCGGCCCAGCGGGTGGGCGTCGAGGGCGGCGAGAGCCTGCTCGGCG CGGACATGTCGCTGAAAAGCCAGGACCCGCAACGATATGCGGCGCTGCACCACCCGGGCGACGCGTTCAGCTACGACATC TTCACCCAGATCGGCGGGCTGCTGACAACCGGCGGGCACACGGCGATGCTGCGCGGCCTGCCGGCCCGACACGTGATCGC GCTGGGCGAGTCCCAGTCGGCGATGTTCCTCACCACCTACATCAACGCCGTCGATCCCCTGGCCGGCGTCTTCGACGGCT TCCTGGTTCATTCCCGGTTCGGGCCTGCCGCCCCGCTCGACGGGACCTCGATCTTCACCGAATCGACTGAGCCGCAAGCG GTGACATTCCGGCCGGAGCTGCGCGTCCCGGTGCTGACGTTGATCACCGAGACCGACGTGTTCGGCGGTCCGCGCGAGGG CTACTACTTCGCCCGCCAGCCCGACAACCCCAGGCTGCGGGTCTGGGAGATCGCCGGGGCCGCGCACGCCGACAACTACA CGATTCAGGTGGCTTTCATCGACAGCGGCTCGGCGCCACTCGAGGACATCGTTTCCGGCTACGCGCCGACCAACATGCTG ATGGGCCAGCAGTTGCCGCACTACATCAACTTCGGCCCGCAGCACCACTACGTGGTGCAGGCAGCGCTGGCCGCCCTGAA CACCTGGGTCACCGCCGGCCAGCCGGCGCCGGGAGCCGAGCCGTTGCAGGTGCGGGAAGGCCCTGCGCCGCAACCGGTTC TGGACGGCAACGGGCTGGCCCGCGGCGGCCTCCGCACCCCGTGGGTGGACGTCCCGATCGCCCGAACCTCGGGGCTCGGC GGTCAGGAGAGCGTCATGTCGGCGATCTTCGGCTCCGGCGAACCGTTCGACGCCGCCACCCTCGAGCGGCTGTATCCCGG TGGGCGGACCGAATATCTGGAGCGCTTCACCGTCGCGCTGGACGCGGCGATCGGCGCCGGGTTCATCCTGCCCGCCGACC GCGCCGAGATACTGCGGCTCGCCGCCGCGACGTTTCCGGGCTAG
Upstream 100 bases:
>100_bases GGGACCGGGTTTCGCATGTGGTGGCCTTCCTCGACGACAGCCTGTTCGCCAAGTTCGGGCTGCCCGCCGCGCTGGGTCCC CGGCAGGAAGGTGTGCGCGC
Downstream 100 bases:
>100_bases AACAGCCGGCTGTCCGGCGGTGGCCCCAGCACCGGGCGCACCAGCCCGGCCCCGGTGATCAGCGGCAGGTCCAGCGCCGA CAGCAGGCCGGGCGGCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MTSSTVGVTPVPGNPRLLLSAYDLATVGYVAEEFFVSATASRYGPAGELGADGCWEVIRCGAADFTTRVVVLTPADPARF NGTVLVEWLNVSGGIDAAAVWMMAHREILRAGYAYVAVSAQRVGVEGGESLLGADMSLKSQDPQRYAALHHPGDAFSYDI FTQIGGLLTTGGHTAMLRGLPARHVIALGESQSAMFLTTYINAVDPLAGVFDGFLVHSRFGPAAPLDGTSIFTESTEPQA VTFRPELRVPVLTLITETDVFGGPREGYYFARQPDNPRLRVWEIAGAAHADNYTIQVAFIDSGSAPLEDIVSGYAPTNML MGQQLPHYINFGPQHHYVVQAALAALNTWVTAGQPAPGAEPLQVREGPAPQPVLDGNGLARGGLRTPWVDVPIARTSGLG GQESVMSAIFGSGEPFDAATLERLYPGGRTEYLERFTVALDAAIGAGFILPADRAEILRLAAATFPG
Sequences:
>Translated_467_residues MTSSTVGVTPVPGNPRLLLSAYDLATVGYVAEEFFVSATASRYGPAGELGADGCWEVIRCGAADFTTRVVVLTPADPARF NGTVLVEWLNVSGGIDAAAVWMMAHREILRAGYAYVAVSAQRVGVEGGESLLGADMSLKSQDPQRYAALHHPGDAFSYDI FTQIGGLLTTGGHTAMLRGLPARHVIALGESQSAMFLTTYINAVDPLAGVFDGFLVHSRFGPAAPLDGTSIFTESTEPQA VTFRPELRVPVLTLITETDVFGGPREGYYFARQPDNPRLRVWEIAGAAHADNYTIQVAFIDSGSAPLEDIVSGYAPTNML MGQQLPHYINFGPQHHYVVQAALAALNTWVTAGQPAPGAEPLQVREGPAPQPVLDGNGLARGGLRTPWVDVPIARTSGLG GQESVMSAIFGSGEPFDAATLERLYPGGRTEYLERFTVALDAAIGAGFILPADRAEILRLAAATFPG >Mature_466_residues TSSTVGVTPVPGNPRLLLSAYDLATVGYVAEEFFVSATASRYGPAGELGADGCWEVIRCGAADFTTRVVVLTPADPARFN GTVLVEWLNVSGGIDAAAVWMMAHREILRAGYAYVAVSAQRVGVEGGESLLGADMSLKSQDPQRYAALHHPGDAFSYDIF TQIGGLLTTGGHTAMLRGLPARHVIALGESQSAMFLTTYINAVDPLAGVFDGFLVHSRFGPAAPLDGTSIFTESTEPQAV TFRPELRVPVLTLITETDVFGGPREGYYFARQPDNPRLRVWEIAGAAHADNYTIQVAFIDSGSAPLEDIVSGYAPTNMLM GQQLPHYINFGPQHHYVVQAALAALNTWVTAGQPAPGAEPLQVREGPAPQPVLDGNGLARGGLRTPWVDVPIARTSGLGG QESVMSAIFGSGEPFDAATLERLYPGGRTEYLERFTVALDAAIGAGFILPADRAEILRLAAATFPG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49459; Mature: 49328
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSTVGVTPVPGNPRLLLSAYDLATVGYVAEEFFVSATASRYGPAGELGADGCWEVIRC CCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC GAADFTTRVVVLTPADPARFNGTVLVEWLNVSGGIDAAAVWMMAHREILRAGYAYVAVSA CCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEH QRVGVEGGESLLGADMSLKSQDPQRYAALHHPGDAFSYDIFTQIGGLLTTGGHTAMLRGL HHCCCCCCCHHCCCCCCCCCCCCHHHHEECCCCCCCCCHHHHHHCCEEECCCCHHHHHCC PARHVIALGESQSAMFLTTYINAVDPLAGVFDGFLVHSRFGPAAPLDGTSIFTESTEPQA CCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCE VTFRPELRVPVLTLITETDVFGGPREGYYFARQPDNPRLRVWEIAGAAHADNYTIQVAFI EEECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCEEEEEEEE DSGSAPLEDIVSGYAPTNMLMGQQLPHYINFGPQHHYVVQAALAALNTWVTAGQPAPGAE CCCCCCHHHHHCCCCCHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC PLQVREGPAPQPVLDGNGLARGGLRTPWVDVPIARTSGLGGQESVMSAIFGSGEPFDAAT CCEECCCCCCCCEECCCCCCCCCCCCCCEECCCHHCCCCCCHHHHHHHHHCCCCCCCHHH LERLYPGGRTEYLERFTVALDAAIGAGFILPADRAEILRLAAATFPG HHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCC >Mature Secondary Structure TSSTVGVTPVPGNPRLLLSAYDLATVGYVAEEFFVSATASRYGPAGELGADGCWEVIRC CCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC GAADFTTRVVVLTPADPARFNGTVLVEWLNVSGGIDAAAVWMMAHREILRAGYAYVAVSA CCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEH QRVGVEGGESLLGADMSLKSQDPQRYAALHHPGDAFSYDIFTQIGGLLTTGGHTAMLRGL HHCCCCCCCHHCCCCCCCCCCCCHHHHEECCCCCCCCCHHHHHHCCEEECCCCHHHHHCC PARHVIALGESQSAMFLTTYINAVDPLAGVFDGFLVHSRFGPAAPLDGTSIFTESTEPQA CCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCE VTFRPELRVPVLTLITETDVFGGPREGYYFARQPDNPRLRVWEIAGAAHADNYTIQVAFI EEECCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCEEEEEEEE DSGSAPLEDIVSGYAPTNMLMGQQLPHYINFGPQHHYVVQAALAALNTWVTAGQPAPGAE CCCCCCHHHHHCCCCCHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC PLQVREGPAPQPVLDGNGLARGGLRTPWVDVPIARTSGLGGQESVMSAIFGSGEPFDAAT CCEECCCCCCCCEECCCCCCCCCCCCCCEECCCHHCCCCCCHHHHHHHHHCCCCCCCHHH LERLYPGGRTEYLERFTVALDAAIGAGFILPADRAEILRLAAATFPG HHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA