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The map label for this gene is kstR2 [H]

Identifier: 41409673

GI number: 41409673

Start: 3973919

End: 3974554

Strand: Direct

Name: kstR2 [H]

Synonym: MAP3575

Alternate gene names: 41409673

Gene position: 3973919-3974554 (Clockwise)

Preceding gene: 41409672

Following gene: 41409674

Centisome position: 82.28

GC content: 68.55

Gene sequence:

>636_bases
ATGCCCGCCGACAGCAGCACCCCGAATGGGCAAACCCGCCGCGAAGAGCTGCTGGCCGTCGCCACCAAGCTGTTCGCCGC
GCGCGGGTATCACGGCACCCGGATGGACGACGTCGCCGACGTGATCGGCCTGAACAAGGCGACCGTCTACCACTACTACG
CCAGCAAGTCGCTGATCCTCTACGACATCTACCAGCAGGCCGCCGAGCGGACGCTGGCCGCGGTCCACGACGACCCCTCG
ATGACCGCCCGCGAGGCGCTGTACCAGTACACCGTGCGGCTGCTCGACCAGATCGCCGCCAACCCCGAGGGCGCCGCCGT
CTACTTCCAGGAGCAGCCCTACATCACCGAGTGGTTCACCAAGGAACAGGTCGCCGCGGTCCGGGAAAAGGAGACCCAGG
TCTACGAGCACGTGCACGGGCTCATCGACCGTGGGATCGCCAGCGGGGAGTTCTACGAGTGCGACTCGCACGTCCTGGCG
CTCGGCTACATCGGCATGACGCTCGGCGCCTACCGGTGGTTGCGCCCGAGCGGACGCCGCAGCGCCAAGGAGATCGCCGC
CGAGTTCAGCACCGCGCTGCTGCGCGGCCTGATCCGCGACGAGGAGATCCGCACCACCTCGCCGCTGGGCCCCTGA

Upstream 100 bases:

>100_bases
GGACACCCGGCGTTTTGCTTAAACTGTCCAACCAGTTGATTGATAGTTATCCTTGGCCGAACCGGGGCTGGCCTGCCCGT
ACCGACGATAGTGAGAACAG

Downstream 100 bases:

>100_bases
CCCTCTCGTCGTAGCCGACGGACGCGGAACCGCCGGCGGCTCCGGGCCGGTAGGCGCCGCCCATTTAATGGACTAGTGTC
TAGAAAAGTTTTGGGCGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MPADSSTPNGQTRREELLAVATKLFAARGYHGTRMDDVADVIGLNKATVYHYYASKSLILYDIYQQAAERTLAAVHDDPS
MTAREALYQYTVRLLDQIAANPEGAAVYFQEQPYITEWFTKEQVAAVREKETQVYEHVHGLIDRGIASGEFYECDSHVLA
LGYIGMTLGAYRWLRPSGRRSAKEIAAEFSTALLRGLIRDEEIRTTSPLGP

Sequences:

>Translated_211_residues
MPADSSTPNGQTRREELLAVATKLFAARGYHGTRMDDVADVIGLNKATVYHYYASKSLILYDIYQQAAERTLAAVHDDPS
MTAREALYQYTVRLLDQIAANPEGAAVYFQEQPYITEWFTKEQVAAVREKETQVYEHVHGLIDRGIASGEFYECDSHVLA
LGYIGMTLGAYRWLRPSGRRSAKEIAAEFSTALLRGLIRDEEIRTTSPLGP
>Mature_210_residues
PADSSTPNGQTRREELLAVATKLFAARGYHGTRMDDVADVIGLNKATVYHYYASKSLILYDIYQQAAERTLAAVHDDPSM
TAREALYQYTVRLLDQIAANPEGAAVYFQEQPYITEWFTKEQVAAVREKETQVYEHVHGLIDRGIASGEFYECDSHVLAL
GYIGMTLGAYRWLRPSGRRSAKEIAAEFSTALLRGLIRDEEIRTTSPLGP

Specific function: Controls the expression of a small regulon that may play a role in the utilization of cholesterol [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23640; Mature: 23509

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPADSSTPNGQTRREELLAVATKLFAARGYHGTRMDDVADVIGLNKATVYHYYASKSLIL
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHH
YDIYQQAAERTLAAVHDDPSMTAREALYQYTVRLLDQIAANPEGAAVYFQEQPYITEWFT
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHH
KEQVAAVREKETQVYEHVHGLIDRGIASGEFYECDSHVLALGYIGMTLGAYRWLRPSGRR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCH
SAKEIAAEFSTALLRGLIRDEEIRTTSPLGP
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCC
>Mature Secondary Structure 
PADSSTPNGQTRREELLAVATKLFAARGYHGTRMDDVADVIGLNKATVYHYYASKSLIL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHH
YDIYQQAAERTLAAVHDDPSMTAREALYQYTVRLLDQIAANPEGAAVYFQEQPYITEWFT
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHH
KEQVAAVREKETQVYEHVHGLIDRGIASGEFYECDSHVLALGYIGMTLGAYRWLRPSGRR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCH
SAKEIAAEFSTALLRGLIRDEEIRTTSPLGP
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA