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The map label for this gene is 41409650

Identifier: 41409650

GI number: 41409650

Start: 3953299

End: 3953904

Strand: Reverse

Name: 41409650

Synonym: MAP3552c

Alternate gene names: NA

Gene position: 3953904-3953299 (Counterclockwise)

Preceding gene: 41409652

Following gene: 41409649

Centisome position: 81.87

GC content: 68.48

Gene sequence:

>606_bases
ATGACCGCAACGGATGGCGAGCCCGATCTCGGCGAGATCGATCCATTTCGGCTCCGATTGCTCGACGGTCTGGCCACCTC
GATCGGCGAGCGCGGCTACCGCGCCAGCACCGTCGCCGACGTCGTCCGCTGCGCACGGACCTCCAAGCGCACCTTCTACG
ACCACTTCGCCGGCAAGGAAGAGTGCTTTCTCGAGCTGCTGGCGGTCGACATCGAGAAATTGGGGGCCAAGATCGCGGCC
TCGGTCGATCCCGAGGCGGATTGGCACGTGCAGATCCGCCAGGCGGTCGAGGCCTACGTGGGATACATCGAGGCGCGACC
GGCCATCACGTTGAGCTGGATCCGCGAGCTGCCCTCGCTGGGTGCGGCCGCGCGCCCGGTGCAGCGCCGCGGGCTGCAGT
TGCTGACCAGCCTGCTGATCGACCTGAGCGCCAGTCCCGGATTCCGCCGCGCGCAGCTTCCTCCGCTGACCGCGCCGCTG
GCCGTGATCCTGCTCGGCGGGCTGCGGGAGCTGACCGCACTTGCGGTCGAAGACGGAAAACCGGTCCGAGGAATCGTGGA
ACCGGCCGTGGATGCGTCCGTAGCTCTGCTCGGCCCCCGGCACTAG

Upstream 100 bases:

>100_bases
CGCGATGTACCACAGACCTTTCGAAATACGGTACTCTGCAGTACCAAAGCTGACAAGATGCGTTTCGAACCGAGAGGGGG
CGCCGGCCGTGACCTCAGCA

Downstream 100 bases:

>100_bases
GCCCGTCCGCTCGCGTAAGTGGAAGTCTCCCAAGCTATTCCGGGCCGAGCCGGTAGGGCTACGCTCACCGCAGATCCCGA
CCGTTGCGACATGGAGGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulatory Protein; Transcriptional Regulator; Regulatory Protein TetR

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTATDGEPDLGEIDPFRLRLLDGLATSIGERGYRASTVADVVRCARTSKRTFYDHFAGKEECFLELLAVDIEKLGAKIAA
SVDPEADWHVQIRQAVEAYVGYIEARPAITLSWIRELPSLGAAARPVQRRGLQLLTSLLIDLSASPGFRRAQLPPLTAPL
AVILLGGLRELTALAVEDGKPVRGIVEPAVDASVALLGPRH

Sequences:

>Translated_201_residues
MTATDGEPDLGEIDPFRLRLLDGLATSIGERGYRASTVADVVRCARTSKRTFYDHFAGKEECFLELLAVDIEKLGAKIAA
SVDPEADWHVQIRQAVEAYVGYIEARPAITLSWIRELPSLGAAARPVQRRGLQLLTSLLIDLSASPGFRRAQLPPLTAPL
AVILLGGLRELTALAVEDGKPVRGIVEPAVDASVALLGPRH
>Mature_200_residues
TATDGEPDLGEIDPFRLRLLDGLATSIGERGYRASTVADVVRCARTSKRTFYDHFAGKEECFLELLAVDIEKLGAKIAAS
VDPEADWHVQIRQAVEAYVGYIEARPAITLSWIRELPSLGAAARPVQRRGLQLLTSLLIDLSASPGFRRAQLPPLTAPLA
VILLGGLRELTALAVEDGKPVRGIVEPAVDASVALLGPRH

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21686; Mature: 21555

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATDGEPDLGEIDPFRLRLLDGLATSIGERGYRASTVADVVRCARTSKRTFYDHFAGKE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
ECFLELLAVDIEKLGAKIAASVDPEADWHVQIRQAVEAYVGYIEARPAITLSWIRELPSL
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
GAAARPVQRRGLQLLTSLLIDLSASPGFRRAQLPPLTAPLAVILLGGLRELTALAVEDGK
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PVRGIVEPAVDASVALLGPRH
CCHHHHHHHCCCEEEECCCCC
>Mature Secondary Structure 
TATDGEPDLGEIDPFRLRLLDGLATSIGERGYRASTVADVVRCARTSKRTFYDHFAGKE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
ECFLELLAVDIEKLGAKIAASVDPEADWHVQIRQAVEAYVGYIEARPAITLSWIRELPSL
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
GAAARPVQRRGLQLLTSLLIDLSASPGFRRAQLPPLTAPLAVILLGGLRELTALAVEDGK
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PVRGIVEPAVDASVALLGPRH
CCHHHHHHHCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA