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The map label for this gene is ydeS [H]

Identifier: 41409646

GI number: 41409646

Start: 3950150

End: 3950821

Strand: Reverse

Name: ydeS [H]

Synonym: MAP3548c

Alternate gene names: 41409646

Gene position: 3950821-3950150 (Counterclockwise)

Preceding gene: 41409649

Following gene: 41409645

Centisome position: 81.8

GC content: 70.24

Gene sequence:

>672_bases
ATGTCCAGGATCTGTTGGCCCTCGGCGCTGAACTGCGGCTCGGCCAGGTCTTCGAGGCGAACGGTCACGCCGACTTATGT
TACTCTGAGTTTCGTAATGGTAGTGGATTTTGGCCGTCCCCGTGATCCCCGGATCGATGCCGCGGTGCTGCGCGCGACGG
TGGAGCTGCTGGCCGAGACGGGCTATCCCGGGCTGCTGGTCTCCGCCATCGCGCAGCGAGCCGGCACCAGCAAGCCCGCG
ATCTACCGCCGCTGGCCCAGCAAGGCGCACCTGGTGCACGAGGCGGTGTTCCCGGTCGGCGCCGACACCGCCATCCCCGA
CACCGGGTCGACGGCCGACGACCTGCGCGAGATGGTGCGCCGCACAATGGTTTTCCTCACCACCCCGGCCGCCAGGGCCG
CCCTGCCCGGGCTGATCGGCGAAATGGCCGCCGATCCGAGCCTGCATTCGGCGCTGCTGGAGCGGTTCGCCGGCGCCATC
GGCGGCGGCCTGGCCGACTGGCTCGCCGCCGCCGCGGCGCGCGGCGAGGCACGGCCCGACGTCACCGCTGCCGAACTGGC
CGAGACCATCGCGGGTGTCACCTTGGTGGCCCTGCTGACCCGCCCCACCGAGCTCGACGACGCGTGGGTCGATCGCACCA
CCAGGTTGCTCCTGAAAGGAATCAGCGCATGA

Upstream 100 bases:

>100_bases
GTAGTCGTCGGGCCCGAAGTCGTGCAGGCCGGTGTCGGCGCTGGCCTGGGCGTGCAGCGCGTCGGCATCCAGCGGGCACT
GCGGGGCCATCGCGGCCATC

Downstream 100 bases:

>100_bases
CGCACGAATCGACCGCCGCATGGCGGGAATTGCTGGCCGCCCTGGGCGAGCTCGACCGCTCCTTCCTGGAGGGCGACCGC
GCGGTCAGCGACGACCGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSRICWPSALNCGSARSSRRTVTPTYVTLSFVMVVDFGRPRDPRIDAAVLRATVELLAETGYPGLLVSAIAQRAGTSKPA
IYRRWPSKAHLVHEAVFPVGADTAIPDTGSTADDLREMVRRTMVFLTTPAARAALPGLIGEMAADPSLHSALLERFAGAI
GGGLADWLAAAAARGEARPDVTAAELAETIAGVTLVALLTRPTELDDAWVDRTTRLLLKGISA

Sequences:

>Translated_223_residues
MSRICWPSALNCGSARSSRRTVTPTYVTLSFVMVVDFGRPRDPRIDAAVLRATVELLAETGYPGLLVSAIAQRAGTSKPA
IYRRWPSKAHLVHEAVFPVGADTAIPDTGSTADDLREMVRRTMVFLTTPAARAALPGLIGEMAADPSLHSALLERFAGAI
GGGLADWLAAAAARGEARPDVTAAELAETIAGVTLVALLTRPTELDDAWVDRTTRLLLKGISA
>Mature_222_residues
SRICWPSALNCGSARSSRRTVTPTYVTLSFVMVVDFGRPRDPRIDAAVLRATVELLAETGYPGLLVSAIAQRAGTSKPAI
YRRWPSKAHLVHEAVFPVGADTAIPDTGSTADDLREMVRRTMVFLTTPAARAALPGLIGEMAADPSLHSALLERFAGAIG
GGLADWLAAAAARGEARPDVTAAELAETIAGVTLVALLTRPTELDDAWVDRTTRLLLKGISA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23616; Mature: 23485

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRICWPSALNCGSARSSRRTVTPTYVTLSFVMVVDFGRPRDPRIDAAVLRATVELLAET
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
GYPGLLVSAIAQRAGTSKPAIYRRWPSKAHLVHEAVFPVGADTAIPDTGSTADDLREMVR
CCCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
RTMVFLTTPAARAALPGLIGEMAADPSLHSALLERFAGAIGGGLADWLAAAAARGEARPD
HHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
VTAAELAETIAGVTLVALLTRPTELDDAWVDRTTRLLLKGISA
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRICWPSALNCGSARSSRRTVTPTYVTLSFVMVVDFGRPRDPRIDAAVLRATVELLAET
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
GYPGLLVSAIAQRAGTSKPAIYRRWPSKAHLVHEAVFPVGADTAIPDTGSTADDLREMVR
CCCHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
RTMVFLTTPAARAALPGLIGEMAADPSLHSALLERFAGAIGGGLADWLAAAAARGEARPD
HHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
VTAAELAETIAGVTLVALLTRPTELDDAWVDRTTRLLLKGISA
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]