Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 41409609

GI number: 41409609

Start: 3909171

End: 3910340

Strand: Direct

Name: yfdE [H]

Synonym: MAP3511

Alternate gene names: 41409609

Gene position: 3909171-3910340 (Clockwise)

Preceding gene: 41409608

Following gene: 41409610

Centisome position: 80.94

GC content: 68.8

Gene sequence:

>1170_bases
ATGGCTAGCCCCAGCGGCCCGATGGCCGGGGTGCGGGTGATCGACCTGACCGCGATGGTGATGGGGCCGTACTGCACGCA
GATCATGGCCGATATGGGCGCCGACGTGATCAAAGTCGAACCGCCGCAGGGGGATAACACCCGCTACATCTCGGTGGGGC
CGGCGCCCGGCATGAGCGGGGTGTTCGTCAACGTCAACCGGGGCAAGCGCAGCGTGGTGCTGGACCTGCAGACCGACGCC
GGGGCACGCGCGCTGCGTGGCCTCGTCGAGACCGCCGACGTGTTCATCCACTCGATGCGCGCCAAGGCGATCGCCAAGCT
CGGCTTCGGCTACGACGACGTCGCCGCGATCAACCCCGCCGTCGTCTACACCAACTGCTACGGGTACGGCCGGCGCGGAC
CCGACCGCGACCGCCCCGCCTACGACGACACCATCCAGGCCGACTACGTGGGCACCATCATGGCCGACAAGATCGCCGGC
CTCACAGCGCTTTACGCGACGACGATGGCGTTGTTCCACCGCGAGCGCACCGGGCAGGGCCAGGAGGTGGAGGTCGCCAT
GTTCGAGACCATGGCCTCGTTCATGCTCGTCGAGCACGCCAACGGCGCCCTGTTCGACCCGCCGCTGGGGCCCGCGGTGT
ATCCGCGCACGGTGGCGCCGAACCGCCGCCCGTACCGCACCAGCGACGGCTACATCGCCGCGCTGATCTACAACGACAAG
CACTGGAACGCCTTCATGAACGCCGTGCGGCCGCCGTGGGCCAGCGAGCTGTATGCGACGCTGGAACAGCGCGCCGCGCA
GATCGACACCGTCTACGGGCTGGTGGCCGAGACCATGAAAGAGCGGTCCACCGCCGAGTGGCTGAAGCTATTCGGCGAGC
TGGAAATACCTGCCGCGCCGCTGAATTCGCCCGGCGCGCTGTTCGACGACCCGCACCTCAACGCCGTCGGGATGTTCCAG
ACCGTCGACACCCCGCACGGCCCGGTGCGCTTCCCCGGCGTGCCGACCTGGTTCTCGCAGACCCCGGGCCGGGTGGCCGG
GCCGGCGCCCGAGCTGGGCGCCCACACCGACGAAGTGCTCGCCGAAATCGGCGCGAGCAGACGCAAAAGCTCCCGAAACG
CCGTGCCGGAGGCGGATTTTGCGTCTGCTCGCGAGGGAAAGGAACTGTAA

Upstream 100 bases:

>100_bases
AACGGTCGGGCGCGCCGAGCGTGGGCCCTGTGCACGCCATCGCAAGGCTTTTCGTGCATAACCCCCACGCTCGGCGAGAG
CGCACGGCAGCGGGCGCGGC

Downstream 100 bases:

>100_bases
ATGGGTGTGCCGGTTTATCAGCGGATCCTCGATCTCTTCCAGGCCGAGGGGGTGAATACCCTGTTCGGCATCCCGGACCC
CAACTTCGTGCGCATGTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MASPSGPMAGVRVIDLTAMVMGPYCTQIMADMGADVIKVEPPQGDNTRYISVGPAPGMSGVFVNVNRGKRSVVLDLQTDA
GARALRGLVETADVFIHSMRAKAIAKLGFGYDDVAAINPAVVYTNCYGYGRRGPDRDRPAYDDTIQADYVGTIMADKIAG
LTALYATTMALFHRERTGQGQEVEVAMFETMASFMLVEHANGALFDPPLGPAVYPRTVAPNRRPYRTSDGYIAALIYNDK
HWNAFMNAVRPPWASELYATLEQRAAQIDTVYGLVAETMKERSTAEWLKLFGELEIPAAPLNSPGALFDDPHLNAVGMFQ
TVDTPHGPVRFPGVPTWFSQTPGRVAGPAPELGAHTDEVLAEIGASRRKSSRNAVPEADFASAREGKEL

Sequences:

>Translated_389_residues
MASPSGPMAGVRVIDLTAMVMGPYCTQIMADMGADVIKVEPPQGDNTRYISVGPAPGMSGVFVNVNRGKRSVVLDLQTDA
GARALRGLVETADVFIHSMRAKAIAKLGFGYDDVAAINPAVVYTNCYGYGRRGPDRDRPAYDDTIQADYVGTIMADKIAG
LTALYATTMALFHRERTGQGQEVEVAMFETMASFMLVEHANGALFDPPLGPAVYPRTVAPNRRPYRTSDGYIAALIYNDK
HWNAFMNAVRPPWASELYATLEQRAAQIDTVYGLVAETMKERSTAEWLKLFGELEIPAAPLNSPGALFDDPHLNAVGMFQ
TVDTPHGPVRFPGVPTWFSQTPGRVAGPAPELGAHTDEVLAEIGASRRKSSRNAVPEADFASAREGKEL
>Mature_388_residues
ASPSGPMAGVRVIDLTAMVMGPYCTQIMADMGADVIKVEPPQGDNTRYISVGPAPGMSGVFVNVNRGKRSVVLDLQTDAG
ARALRGLVETADVFIHSMRAKAIAKLGFGYDDVAAINPAVVYTNCYGYGRRGPDRDRPAYDDTIQADYVGTIMADKIAGL
TALYATTMALFHRERTGQGQEVEVAMFETMASFMLVEHANGALFDPPLGPAVYPRTVAPNRRPYRTSDGYIAALIYNDKH
WNAFMNAVRPPWASELYATLEQRAAQIDTVYGLVAETMKERSTAEWLKLFGELEIPAAPLNSPGALFDDPHLNAVGMFQT
VDTPHGPVRFPGVPTWFSQTPGRVAGPAPELGAHTDEVLAEIGASRRKSSRNAVPEADFASAREGKEL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=385, Percent_Identity=27.7922077922078, Blast_Score=151, Evalue=8e-37,
Organism=Homo sapiens, GI300863124, Length=412, Percent_Identity=27.1844660194175, Blast_Score=145, Evalue=6e-35,
Organism=Homo sapiens, GI300863126, Length=363, Percent_Identity=27.2727272727273, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI266456254, Length=396, Percent_Identity=26.010101010101, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI42794625, Length=396, Percent_Identity=26.010101010101, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI13376042, Length=412, Percent_Identity=24.7572815533981, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI266458393, Length=247, Percent_Identity=30.3643724696356, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI266458397, Length=247, Percent_Identity=30.3643724696356, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI42822893, Length=127, Percent_Identity=33.0708661417323, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI266458395, Length=126, Percent_Identity=32.5396825396825, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87082093, Length=393, Percent_Identity=31.0432569974555, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1788717, Length=406, Percent_Identity=27.0935960591133, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1786222, Length=398, Percent_Identity=27.1356783919598, Blast_Score=96, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24648431, Length=385, Percent_Identity=30.1298701298701, Blast_Score=167, Evalue=8e-42,
Organism=Drosophila melanogaster, GI24585488, Length=202, Percent_Identity=28.2178217821782, Blast_Score=89, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42056; Mature: 41925

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASPSGPMAGVRVIDLTAMVMGPYCTQIMADMGADVIKVEPPQGDNTRYISVGPAPGMSG
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCCCCE
VFVNVNRGKRSVVLDLQTDAGARALRGLVETADVFIHSMRAKAIAKLGFGYDDVAAINPA
EEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCE
VVYTNCYGYGRRGPDRDRPAYDDTIQADYVGTIMADKIAGLTALYATTMALFHRERTGQG
EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QEVEVAMFETMASFMLVEHANGALFDPPLGPAVYPRTVAPNRRPYRTSDGYIAALIYNDK
CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
HWNAFMNAVRPPWASELYATLEQRAAQIDTVYGLVAETMKERSTAEWLKLFGELEIPAAP
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LNSPGALFDDPHLNAVGMFQTVDTPHGPVRFPGVPTWFSQTPGRVAGPAPELGAHTDEVL
CCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCHHCCCCCCCCCCCCCCCCCHHHHH
AEIGASRRKSSRNAVPEADFASAREGKEL
HHHHHHHHHHCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
ASPSGPMAGVRVIDLTAMVMGPYCTQIMADMGADVIKVEPPQGDNTRYISVGPAPGMSG
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCCCCE
VFVNVNRGKRSVVLDLQTDAGARALRGLVETADVFIHSMRAKAIAKLGFGYDDVAAINPA
EEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCE
VVYTNCYGYGRRGPDRDRPAYDDTIQADYVGTIMADKIAGLTALYATTMALFHRERTGQG
EEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QEVEVAMFETMASFMLVEHANGALFDPPLGPAVYPRTVAPNRRPYRTSDGYIAALIYNDK
CEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
HWNAFMNAVRPPWASELYATLEQRAAQIDTVYGLVAETMKERSTAEWLKLFGELEIPAAP
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LNSPGALFDDPHLNAVGMFQTVDTPHGPVRFPGVPTWFSQTPGRVAGPAPELGAHTDEVL
CCCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCHHCCCCCCCCCCCCCCCCCHHHHH
AEIGASRRKSSRNAVPEADFASAREGKEL
HHHHHHHHHHCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]