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The map label for this gene is sdhD

Identifier: 41409540

GI number: 41409540

Start: 3821276

End: 3821746

Strand: Direct

Name: sdhD

Synonym: MAP3442

Alternate gene names: NA

Gene position: 3821276-3821746 (Clockwise)

Preceding gene: 41409539

Following gene: 41409541

Centisome position: 79.12

GC content: 66.45

Gene sequence:

>471_bases
ATGAGCACCCCCGACCTGCAGCTCGGCCCGGGCCAGATCGCCCCGGTCAAACAGCGCTTCTACGACCGCCCGGCCAGCCT
GGACAATCCCCGCTCCCCGCGGCGCCGCGCCGGCATCCCCAACTTCGAGAAGTTCGCCTGGCTGTTCATGCGGTTCTCCG
GCGTCGCGCTGTTCGTGCTGGCGATCGGCCACCTGTTCATCATGCTGATGTGGGACGACGGCGTGTACCGCATCGACTTC
AATTACGTGGCGCAGCGCTGGGCGTCGCCGTTCTGGCAGCTCTGGGACCTGGCGCTGCTGTGGCTGGCCCAGCTGCACGG
CGGCAACGGGCTGCGCACCATCATCGACGACTACAGCCGCAAGGACAGCACCCGGTTCTGGCTGAACAGCCTGCTGCTGC
TGTCGATGGGCTTCACCCTGGTGCTGGGCACCTACGTGCTGCTGACCTTCGACCCGAACATCTCGGGATAG

Upstream 100 bases:

>100_bases
GCCACCAGCGGCTGATGTTCTGGATCGTCGGCGTGGTGTTCCTGCTGCTGATGGTCCCGGCCGGCGTGGTGACCGTCATC
CACATGCTGGGGCACTTCCG

Downstream 100 bases:

>100_bases
GCGAGTCATGATCCAACAACATCGATACGACGTGGTGATCGTCGGCGCCGGCGGTGCCGGGATGCGCGCGGCCGTGGAAG
CCGGCCCGCGGGTGCGCACC

Product: SdhD

Products: fumarate; reduced acceptor

Alternate protein names: Succinate Dehydrogenase Subunit D; Succinate Dehydrogenase Membrane Subunit; Succinate Dehydrogenase Cytochrome; Succinate Dehydrogenase Hydrophobic Anchor Subunit-Like; Succinate Dehydrogenase; Succinate Dehydrogenase SdhD; Succinate Dehydrogenase Cytochrome B Subunit; Succinate Dehydrogenase Hydrophobic Membrane Anchor Protei

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSTPDLQLGPGQIAPVKQRFYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGVALFVLAIGHLFIMLMWDDGVYRIDF
NYVAQRWASPFWQLWDLALLWLAQLHGGNGLRTIIDDYSRKDSTRFWLNSLLLLSMGFTLVLGTYVLLTFDPNISG

Sequences:

>Translated_156_residues
MSTPDLQLGPGQIAPVKQRFYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGVALFVLAIGHLFIMLMWDDGVYRIDF
NYVAQRWASPFWQLWDLALLWLAQLHGGNGLRTIIDDYSRKDSTRFWLNSLLLLSMGFTLVLGTYVLLTFDPNISG
>Mature_155_residues
STPDLQLGPGQIAPVKQRFYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGVALFVLAIGHLFIMLMWDDGVYRIDFN
YVAQRWASPFWQLWDLALLWLAQLHGGNGLRTIIDDYSRKDSTRFWLNSLLLLSMGFTLVLGTYVLLTFDPNISG

Specific function: Unknown

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.3.99.1

Molecular weight: Translated: 18003; Mature: 17872

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPDLQLGPGQIAPVKQRFYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGVALFVL
CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
AIGHLFIMLMWDDGVYRIDFNYVAQRWASPFWQLWDLALLWLAQLHGGNGLRTIIDDYSR
HHHHHHHHHEECCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
KDSTRFWLNSLLLLSMGFTLVLGTYVLLTFDPNISG
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
>Mature Secondary Structure 
STPDLQLGPGQIAPVKQRFYDRPASLDNPRSPRRRAGIPNFEKFAWLFMRFSGVALFVL
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
AIGHLFIMLMWDDGVYRIDFNYVAQRWASPFWQLWDLALLWLAQLHGGNGLRTIIDDYSR
HHHHHHHHHEECCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
KDSTRFWLNSLLLLSMGFTLVLGTYVLLTFDPNISG
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA