Click here to switch to the map view.

The map label for this gene is sdhC

Identifier: 41409539

GI number: 41409539

Start: 3820824

End: 3821279

Strand: Direct

Name: sdhC

Synonym: MAP3441

Alternate gene names: NA

Gene position: 3820824-3821279 (Clockwise)

Preceding gene: 41409532

Following gene: 41409540

Centisome position: 79.11

GC content: 65.57

Gene sequence:

>456_bases
GTGAGGGGTGACACAGGGGTGACAACACAACCGACAACCGCGGATCCGGCGACACCGGTATCGGCTCCCGCGCGCAAACG
CAGGCCACCACGCACCCTGTACCGGGGCGACCCCGGCATGTGGTCGTGGGTGCTGCACCGGATCAGCGGCGCGACGATCT
TCTTTTTCCTGTTCGTGCACGTCCTGGACGCCGCGATGCTGCGGGTCAGCCCGCAGACCTACAACGCGGTGATCCACGAC
TACCAGATGCCGATCGTCGGGGTGATGGAGTACGGCCTGATCGCCGCGGTGCTCTTCCACGGGCTGAACGGCATCCGGGT
GATCCTGATCGACTTCTGGTCCGAAGGCCCGCGCCACCAGCGGCTGATGTTCTGGATCGTCGGCGTGGTGTTCCTGCTGC
TGATGGTCCCGGCCGGCGTGGTGACCGTCATCCACATGCTGGGGCACTTCCGATGA

Upstream 100 bases:

>100_bases
GGCATTTCGCTTGACGGACATCGGCGCGGGGCGCGCCGCGTGCGAGCTAAGCTCAAGTGCCCGGCGTGACCGTCGCAAGC
AAGAAGGTCGGAAGAAGGCG

Downstream 100 bases:

>100_bases
GCACCCCCGACCTGCAGCTCGGCCCGGGCCAGATCGCCCCGGTCAAACAGCGCTTCTACGACCGCCCGGCCAGCCTGGAC
AATCCCCGCTCCCCGCGGCG

Product: hypothetical protein

Products: fumarate; reduced acceptor

Alternate protein names: Succinate Dehydrogenase Cytochrome B Subunit; Succinate Dehydrogenase Membrane Subunit; Succinate Dehydrogenase Cytochrome Subunit; Succinate Dehydrogenase Subunit C; Succinate Dehydrogenase SdhC; Succinate Dehydrogenase Membrane Anchor Subunit

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MRGDTGVTTQPTTADPATPVSAPARKRRPPRTLYRGDPGMWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHD
YQMPIVGVMEYGLIAAVLFHGLNGIRVILIDFWSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR

Sequences:

>Translated_151_residues
MRGDTGVTTQPTTADPATPVSAPARKRRPPRTLYRGDPGMWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHD
YQMPIVGVMEYGLIAAVLFHGLNGIRVILIDFWSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR
>Mature_151_residues
MRGDTGVTTQPTTADPATPVSAPARKRRPPRTLYRGDPGMWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHD
YQMPIVGVMEYGLIAAVLFHGLNGIRVILIDFWSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR

Specific function: Unknown

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.3.99.1

Molecular weight: Translated: 16980; Mature: 16980

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGDTGVTTQPTTADPATPVSAPARKRRPPRTLYRGDPGMWSWVLHRISGATIFFFLFVH
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH
VLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLFHGLNGIRVILIDFWSEGPRHQ
HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHH
RLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRGDTGVTTQPTTADPATPVSAPARKRRPPRTLYRGDPGMWSWVLHRISGATIFFFLFVH
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH
VLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLFHGLNGIRVILIDFWSEGPRHQ
HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHH
RLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA