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The map label for this gene is ygdK [C]

Identifier: 41409501

GI number: 41409501

Start: 3778672

End: 3779094

Strand: Direct

Name: ygdK [C]

Synonym: MAP3403

Alternate gene names: 41409501

Gene position: 3778672-3779094 (Clockwise)

Preceding gene: 41409500

Following gene: 41409502

Centisome position: 78.24

GC content: 69.74

Gene sequence:

>423_bases
ATGAGCATCCCCGCGCCGCTGGCCGAAGTGGTGTCCGACTTCGCCGAAGTGCAGGGCCAGGACAAGCTGGCGCTGCTGCT
GGAATTCGCCAACGAACTCCCCCCGCTGCCGCCGGAGCTCGAGGAGGCGGCCATGGAGCCGGTGCCCGAATGCCAGACGC
CGCTGTTCATGCACGTCGATGCCAGCGACCGGAACCGGGTGCGGCTGCACTTTTCCGCACCCGCCGAATCGCCGACCACC
CGGGGCTTCGCCGCGATCCTGGCCACCGGTCTGGACCGCCAGCCCGCCGCCGACATCCTCGCGGTGCCAGAGGATTTTTA
TGATGACCTCGGGCTGGCCGCGCTGATCAGCCCGCTGCGGTTGCGCGGCCTGTCGGCGATGCTCGCCCGGATCAAGCGCA
GGCTGCGCGAGTCGCCCGGCTAA

Upstream 100 bases:

>100_bases
TACGACGGGTCGTGGACCGAATGGGGAAACACCGTGCGCACCCCGATCGTGGCGGGCGAGGAGCCCGGTCAGGCGCCGGC
GGGAGTGTGACGGCGGCGCG

Downstream 100 bases:

>100_bases
ATCCGGACCGCCTGCATCGGCCCAACGGTGCGGCGCTTAGACTTCCGGAGAACTCGTAGTAAGAAATTCTCTTAGAGAAG
CCCCGCAGCAATACGTCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSIPAPLAEVVSDFAEVQGQDKLALLLEFANELPPLPPELEEAAMEPVPECQTPLFMHVDASDRNRVRLHFSAPAESPTT
RGFAAILATGLDRQPAADILAVPEDFYDDLGLAALISPLRLRGLSAMLARIKRRLRESPG

Sequences:

>Translated_140_residues
MSIPAPLAEVVSDFAEVQGQDKLALLLEFANELPPLPPELEEAAMEPVPECQTPLFMHVDASDRNRVRLHFSAPAESPTT
RGFAAILATGLDRQPAADILAVPEDFYDDLGLAALISPLRLRGLSAMLARIKRRLRESPG
>Mature_139_residues
SIPAPLAEVVSDFAEVQGQDKLALLLEFANELPPLPPELEEAAMEPVPECQTPLFMHVDASDRNRVRLHFSAPAESPTTR
GFAAILATGLDRQPAADILAVPEDFYDDLGLAALISPLRLRGLSAMLARIKRRLRESPG

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15225; Mature: 15093

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPAPLAEVVSDFAEVQGQDKLALLLEFANELPPLPPELEEAAMEPVPECQTPLFMHVD
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEEEC
ASDRNRVRLHFSAPAESPTTRGFAAILATGLDRQPAADILAVPEDFYDDLGLAALISPLR
CCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHEECCHHHHHHCCHHHHHHHHH
LRGLSAMLARIKRRLRESPG
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SIPAPLAEVVSDFAEVQGQDKLALLLEFANELPPLPPELEEAAMEPVPECQTPLFMHVD
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEEEC
ASDRNRVRLHFSAPAESPTTRGFAAILATGLDRQPAADILAVPEDFYDDLGLAALISPLR
CCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHEECCHHHHHHCCHHHHHHHHH
LRGLSAMLARIKRRLRESPG
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]