| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is rcp1 [H]
Identifier: 41409487
GI number: 41409487
Start: 3764938
End: 3765378
Strand: Reverse
Name: rcp1 [H]
Synonym: MAP3389c
Alternate gene names: 41409487
Gene position: 3765378-3764938 (Counterclockwise)
Preceding gene: 41409488
Following gene: 41409486
Centisome position: 77.96
GC content: 63.72
Gene sequence:
>441_bases ATGACAACGGCCGGTAGAGCCATCGACATCCTGCTCGTCGAGGACGACCCCGGAGACGAGCTGATCACGCGAGAAGCCTT CGAGCACAACAAACTCAACAACAGGCTGCACGTGGCGCACGACGGCGAGGAGGGCCTCAACTACCTGTACCGGCGCGGTG AGTTCGCCGACGCGCCGCGGCCCGACCTGATCCTGCTGGACCTGAACCTGCCCAAATACGACGGCCGCCAGCTGCTGGAG AAGATCAAGTCCGACCCCGACCTGGCCCAGATCCCGGTCGTGGTGCTCACCACCTCCTCGGCCGAGGAGGACATCCTGAA GAGCTACAAGCTGCACGCCAACGCCTACGTCACCAAACCGGTCGACCTGGACCAGTTCATGAAGGCGGTCCGGCAGATCG ACGAGTTCTTCGTTCAGGTGGTGCGGCTGCCCAGCGCCTGA
Upstream 100 bases:
>100_bases TCGACACGTCCTACACCGACGGGACCCGATTCGAATTCAGTTTGCCCATGCCCGGACCCGTCGACGAAACGGACGCAGTC GCTTTGGAAGGAGCGCAGCA
Downstream 100 bases:
>100_bases GCGCCGGCCGGTCCCGGGCGTGCGCCCGGCACTCATTCACCCCTTATTCACCTCTCAGCCTTTGTCAAGGGTTTGTATAT TCACGATTGATTAACTTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MTTAGRAIDILLVEDDPGDELITREAFEHNKLNNRLHVAHDGEEGLNYLYRRGEFADAPRPDLILLDLNLPKYDGRQLLE KIKSDPDLAQIPVVVLTTSSAEEDILKSYKLHANAYVTKPVDLDQFMKAVRQIDEFFVQVVRLPSA
Sequences:
>Translated_146_residues MTTAGRAIDILLVEDDPGDELITREAFEHNKLNNRLHVAHDGEEGLNYLYRRGEFADAPRPDLILLDLNLPKYDGRQLLE KIKSDPDLAQIPVVVLTTSSAEEDILKSYKLHANAYVTKPVDLDQFMKAVRQIDEFFVQVVRLPSA >Mature_145_residues TTAGRAIDILLVEDDPGDELITREAFEHNKLNNRLHVAHDGEEGLNYLYRRGEFADAPRPDLILLDLNLPKYDGRQLLEK IKSDPDLAQIPVVVLTTSSAEEDILKSYKLHANAYVTKPVDLDQFMKAVRQIDEFFVQVVRLPSA
Specific function: Forms a two-component system with cph1 in which it acts as receiver substrate [H]
COG id: COG0784
COG function: function code T; FOG: CheY-like receiver
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001789 [H]
Pfam domain/function: PF00072 Response_reg [H]
EC number: 2.7.3.-
Molecular weight: Translated: 16557; Mature: 16426
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAGRAIDILLVEDDPGDELITREAFEHNKLNNRLHVAHDGEEGLNYLYRRGEFADAPR CCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCC PDLILLDLNLPKYDGRQLLEKIKSDPDLAQIPVVVLTTSSAEEDILKSYKLHANAYVTKP CCEEEEECCCCCCCHHHHHHHHCCCCCHHHCCEEEEECCCCHHHHHHHHHHCCCEEEECC VDLDQFMKAVRQIDEFFVQVVRLPSA CCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TTAGRAIDILLVEDDPGDELITREAFEHNKLNNRLHVAHDGEEGLNYLYRRGEFADAPR CCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCC PDLILLDLNLPKYDGRQLLEKIKSDPDLAQIPVVVLTTSSAEEDILKSYKLHANAYVTKP CCEEEEECCCCCCCHHHHHHHHCCCCCHHHCCEEEEECCCCHHHHHHHHHHCCCEEEECC VDLDQFMKAVRQIDEFFVQVVRLPSA CCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 9278513 [H]