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The map label for this gene is yfdE [H]

Identifier: 41409484

GI number: 41409484

Start: 3760458

End: 3761678

Strand: Direct

Name: yfdE [H]

Synonym: MAP3386

Alternate gene names: 41409484

Gene position: 3760458-3761678 (Clockwise)

Preceding gene: 41409483

Following gene: 41409493

Centisome position: 77.86

GC content: 70.19

Gene sequence:

>1221_bases
ATGCCACACGAGACGCCGAACGGCAAGCCCCCCAAGCCCCTTGACGGATTCCGGGTGCTCGACTTCACCCAGAACATCGC
CGGGCCGATGGCCGGTCAGGTGCTGGCCGACCTGGGCGCCGAGGTCATCAAGATCGAGGCGCCGATCGGCGAGGCGGCCC
GGCACATCACCGCCGTGCTGCCCGGCCGTCCGCCGTTGGCCACCCTGTTCCTGCCGCACAACCGGGGCAAGAAGTCGGTG
CTGGCCGACCTGCGCGACGACGAGGCCAAGCAGCGGATCCTGCGACTGGTCGACACCGCCGACGTTGTGCTGGAAGGGTT
TCGGCCCGGGGTGATGGAACGCATGGGCCTGGGCCCCGAGGAGCTGCAGGGCCGCAACCCCAGACTCGTCTACGCCCGGC
TGTCCGCCTACGGCGGCAACGGCCCGGAGGGCAGCCGGCCGGGGGTGGACCTGATGGTGGCCGCCGAGTCGGGCATGACC
ACCGGGATGCCCACCCCTACCGGCAAACCCCAGATCATCCCGTTCCAGCTGGTCGACGCCGCCAGCGGGCACGTGCTGGC
CCAGGCGGTGCTGGCCGCGCTGCTCAACCGGGAGCGGCACGGGGTGGCCGACGTGGTGCGGGTCGCGATGTACGACGTGG
CGGTCAGCCTGCAGGCCAGCCAGCTGACCATCCACCTCAACAAGCCGAACGCCGACCACAAGCCGAGCGATTCGGCGTCA
AAACCCAAGCGGCGCAAGGGTGTTGGTTTCGCCACCCAGCCGTCGGACGCGTTCAAGGCCGCCGACGGCTATTTGGTGAT
CAGCGCGTACGTGCCCAAGCACTGGGACAAGCTGTGCGAGGTCATCGGCCGGCCCGACCTGCGCGACGACGAACGGTTCG
CCGACCAGCGCTCCCGCGCGCTGAACTACCCCGAGCTGACCGAGGAGCTGGAGAAGGCGCTGGCCGCCAAGACCGCCGAC
GAATGGGTCCGGCTGCTGCAGGACGCCGGGCTGATGGCCTGCCACGCCTACACCTGGAAGCAGGTGGTGGGCACCCCGCT
GTTCGCCGAGAACGAGCTCGCCCTACAGGTCGGCGAGGGCGCCGATGCCGTCACGGTAATCCGCACTCCGGCAAGGTATT
CCAGCTTCGAGGCCGCGTCGGCCGGCTGGGCCACCGACCCTCCCCCCGCGCTGGGTCAGCACACCGAGGAGTACCTGGGC
GCACCGCAGACCGCGTCGTGA

Upstream 100 bases:

>100_bases
ACAACGGGCTGCCGCTGCAGTCGACCGAGCCCGGCGCGCCGTTCGCCCAGAATTACTACTGCACCGCGGTGCTGAACAAG
GCAGGTTAGGAACCCAACGC

Downstream 100 bases:

>100_bases
GCCTCACTGCACCAGCTTGACCACCCGGTCGTCGCCGCGGTCGGCGACGTAGACGCTCTGGTCCCTGTCCACCGCCACCG
CCAACGGCGTGTTGAGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MPHETPNGKPPKPLDGFRVLDFTQNIAGPMAGQVLADLGAEVIKIEAPIGEAARHITAVLPGRPPLATLFLPHNRGKKSV
LADLRDDEAKQRILRLVDTADVVLEGFRPGVMERMGLGPEELQGRNPRLVYARLSAYGGNGPEGSRPGVDLMVAAESGMT
TGMPTPTGKPQIIPFQLVDAASGHVLAQAVLAALLNRERHGVADVVRVAMYDVAVSLQASQLTIHLNKPNADHKPSDSAS
KPKRRKGVGFATQPSDAFKAADGYLVISAYVPKHWDKLCEVIGRPDLRDDERFADQRSRALNYPELTEELEKALAAKTAD
EWVRLLQDAGLMACHAYTWKQVVGTPLFAENELALQVGEGADAVTVIRTPARYSSFEAASAGWATDPPPALGQHTEEYLG
APQTAS

Sequences:

>Translated_406_residues
MPHETPNGKPPKPLDGFRVLDFTQNIAGPMAGQVLADLGAEVIKIEAPIGEAARHITAVLPGRPPLATLFLPHNRGKKSV
LADLRDDEAKQRILRLVDTADVVLEGFRPGVMERMGLGPEELQGRNPRLVYARLSAYGGNGPEGSRPGVDLMVAAESGMT
TGMPTPTGKPQIIPFQLVDAASGHVLAQAVLAALLNRERHGVADVVRVAMYDVAVSLQASQLTIHLNKPNADHKPSDSAS
KPKRRKGVGFATQPSDAFKAADGYLVISAYVPKHWDKLCEVIGRPDLRDDERFADQRSRALNYPELTEELEKALAAKTAD
EWVRLLQDAGLMACHAYTWKQVVGTPLFAENELALQVGEGADAVTVIRTPARYSSFEAASAGWATDPPPALGQHTEEYLG
APQTAS
>Mature_405_residues
PHETPNGKPPKPLDGFRVLDFTQNIAGPMAGQVLADLGAEVIKIEAPIGEAARHITAVLPGRPPLATLFLPHNRGKKSVL
ADLRDDEAKQRILRLVDTADVVLEGFRPGVMERMGLGPEELQGRNPRLVYARLSAYGGNGPEGSRPGVDLMVAAESGMTT
GMPTPTGKPQIIPFQLVDAASGHVLAQAVLAALLNRERHGVADVVRVAMYDVAVSLQASQLTIHLNKPNADHKPSDSASK
PKRRKGVGFATQPSDAFKAADGYLVISAYVPKHWDKLCEVIGRPDLRDDERFADQRSRALNYPELTEELEKALAAKTADE
WVRLLQDAGLMACHAYTWKQVVGTPLFAENELALQVGEGADAVTVIRTPARYSSFEAASAGWATDPPPALGQHTEEYLGA
PQTAS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=391, Percent_Identity=28.9002557544757, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI300863124, Length=417, Percent_Identity=27.3381294964029, Blast_Score=152, Evalue=7e-37,
Organism=Homo sapiens, GI300863126, Length=391, Percent_Identity=27.6214833759591, Blast_Score=141, Evalue=9e-34,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=28.6802030456853, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI42794625, Length=394, Percent_Identity=28.6802030456853, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI13376042, Length=417, Percent_Identity=24.7002398081535, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=30.03663003663, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI266458397, Length=201, Percent_Identity=33.8308457711443, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=37.9310344827586, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=37.9310344827586, Blast_Score=90, Evalue=3e-18,
Organism=Escherichia coli, GI87082093, Length=326, Percent_Identity=29.4478527607362, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1788717, Length=405, Percent_Identity=26.1728395061728, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786222, Length=322, Percent_Identity=27.9503105590062, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=390, Percent_Identity=24.3589743589744, Blast_Score=99, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=323, Percent_Identity=27.2445820433437, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=31.3131313131313, Blast_Score=166, Evalue=2e-41,
Organism=Drosophila melanogaster, GI24585488, Length=322, Percent_Identity=31.055900621118, Blast_Score=126, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43682; Mature: 43551

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHETPNGKPPKPLDGFRVLDFTQNIAGPMAGQVLADLGAEVIKIEAPIGEAARHITAVL
CCCCCCCCCCCCCCCCCEEEHHHHHHCCHHHHHHHHHCCCEEEEEECCCCHHHHHHEEEC
PGRPPLATLFLPHNRGKKSVLADLRDDEAKQRILRLVDTADVVLEGFRPGVMERMGLGPE
CCCCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHH
ELQGRNPRLVYARLSAYGGNGPEGSRPGVDLMVAAESGMTTGMPTPTGKPQIIPFQLVDA
HHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECC
ASGHVLAQAVLAALLNRERHGVADVVRVAMYDVAVSLQASQLTIHLNKPNADHKPSDSAS
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCCC
KPKRRKGVGFATQPSDAFKAADGYLVISAYVPKHWDKLCEVIGRPDLRDDERFADQRSRA
CCHHHCCCCCCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHC
LNYPELTEELEKALAAKTADEWVRLLQDAGLMACHAYTWKQVVGTPLFAENELALQVGEG
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEHHHHHHHHHCCCCEECCCEEEEECCC
ADAVTVIRTPARYSSFEAASAGWATDPPPALGQHTEEYLGAPQTAS
CCEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
PHETPNGKPPKPLDGFRVLDFTQNIAGPMAGQVLADLGAEVIKIEAPIGEAARHITAVL
CCCCCCCCCCCCCCCCEEEHHHHHHCCHHHHHHHHHCCCEEEEEECCCCHHHHHHEEEC
PGRPPLATLFLPHNRGKKSVLADLRDDEAKQRILRLVDTADVVLEGFRPGVMERMGLGPE
CCCCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHH
ELQGRNPRLVYARLSAYGGNGPEGSRPGVDLMVAAESGMTTGMPTPTGKPQIIPFQLVDA
HHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECC
ASGHVLAQAVLAALLNRERHGVADVVRVAMYDVAVSLQASQLTIHLNKPNADHKPSDSAS
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCCCCCCCCCCCC
KPKRRKGVGFATQPSDAFKAADGYLVISAYVPKHWDKLCEVIGRPDLRDDERFADQRSRA
CCHHHCCCCCCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHC
LNYPELTEELEKALAAKTADEWVRLLQDAGLMACHAYTWKQVVGTPLFAENELALQVGEG
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEHHHHHHHHHCCCCEECCCEEEEECCC
ADAVTVIRTPARYSSFEAASAGWATDPPPALGQHTEEYLGAPQTAS
CCEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]