| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is whiB2
Identifier: 41409470
GI number: 41409470
Start: 3746324
End: 3746689
Strand: Reverse
Name: whiB2
Synonym: MAP3372c
Alternate gene names: NA
Gene position: 3746689-3746324 (Counterclockwise)
Preceding gene: 41409476
Following gene: 41409468
Centisome position: 77.57
GC content: 69.4
Gene sequence:
>366_bases ATGTCTTACGAAAATCTTCGAGGCGCCATGGCGGGCACGCCGCACACCCCGATCGACTCGGCGCCGGCCCGTCCCGTCCG GCCGCACTTGACCGTGGTTCCTGATGCGCCAGTCGCATTCGAGCCCGAGCCGCTGCCGGCGCCCGTCGCCGACCAGTGGC AGGACCGGGCGCTGTGCGCGCAAACCGACCCGGAGGCCTTCTTCCCGGAGAAGGGCGGCTCCACCCGCGAGGCCAAGAAG ATCTGCCTGGGCTGCGAGGTGCGCCACGAATGCCTGGAGTACGCACTCGAGCACGACGAGCGCTTCGGCATCTGGGGCGG TCTGTCCGAACGCGAACGCCGCCGCCTCAAGCGCGGCATCATCTGA
Upstream 100 bases:
>100_bases GTGTCGCAGACCGAGATTCGATCACTTGTTCGAATTGTCTGTACATCAGAACAGTGGGAACCAATCACACTCCAATCAAG CTGAGGAGGCGGACGACCGT
Downstream 100 bases:
>100_bases CCCGCTCCCGCAACGACCGGGGGTCAGTCGTCGTCGATCGTCGGGTCGATGACCGAGGGTTCCACGTCGAGGTAGATGGC GACCTGGGCCACCAGGATTT
Product: WhiB2
Products: NA
Alternate protein names: WhiB Family Transcriptional Regulator; WhiB-Family Transcriptional Regulator; Transcriptional Regulator; Transcription Factor WhiB Family Protein; Regulatory Protein; Transcriptional Regulatory; Sporulation Regulatory Protein; Whib-Like Transcriptional Regulator; WhiB Family Transcription Factor; Transcription Factor; Transcription Regulator; Regulatory Protein WhiB; Transcriptional Regulatory Protein; Transcriptional Regulator WhiB; WhiB Family Regulatory Protein; WhiB-Type Transcription Regulator; WhiB Transcriptional Regulator; WhiB Family Transcription Regulator
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSYENLRGAMAGTPHTPIDSAPARPVRPHLTVVPDAPVAFEPEPLPAPVADQWQDRALCAQTDPEAFFPEKGGSTREAKK ICLGCEVRHECLEYALEHDERFGIWGGLSERERRRLKRGII
Sequences:
>Translated_121_residues MSYENLRGAMAGTPHTPIDSAPARPVRPHLTVVPDAPVAFEPEPLPAPVADQWQDRALCAQTDPEAFFPEKGGSTREAKK ICLGCEVRHECLEYALEHDERFGIWGGLSERERRRLKRGII >Mature_120_residues SYENLRGAMAGTPHTPIDSAPARPVRPHLTVVPDAPVAFEPEPLPAPVADQWQDRALCAQTDPEAFFPEKGGSTREAKKI CLGCEVRHECLEYALEHDERFGIWGGLSERERRRLKRGII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13516; Mature: 13385
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYENLRGAMAGTPHTPIDSAPARPVRPHLTVVPDAPVAFEPEPLPAPVADQWQDRALCA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC QTDPEAFFPEKGGSTREAKKICLGCEVRHECLEYALEHDERFGIWGGLSERERRRLKRGI CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC I C >Mature Secondary Structure SYENLRGAMAGTPHTPIDSAPARPVRPHLTVVPDAPVAFEPEPLPAPVADQWQDRALCA CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC QTDPEAFFPEKGGSTREAKKICLGCEVRHECLEYALEHDERFGIWGGLSERERRRLKRGI CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCC I C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA