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The map label for this gene is rpfG [H]

Identifier: 41409450

GI number: 41409450

Start: 3720371

End: 3721942

Strand: Reverse

Name: rpfG [H]

Synonym: MAP3352c

Alternate gene names: 41409450

Gene position: 3721942-3720371 (Counterclockwise)

Preceding gene: 41409451

Following gene: 41409449

Centisome position: 77.06

GC content: 72.96

Gene sequence:

>1572_bases
ATGATGCTCATGGCGCAGGCCGTACTCCCGACGCGGGCGGAGCTGCTGGCGGCGCTGTCGGTGGCGATCGACCTCGGCCT
CGGCCAGCCCGCCGAGCACATGCTGCGGGCGGCGCTCATCGCGACCCGACTCTGCGACCGGCTCGGGCTCAGCCGGCAGC
AGCGCGACTGCGTGTACTACACCACCCTGGTCATGTGGATCGGCTGCCACGCGGATTCGCACGAGTACGCGCGGTGGTTC
GGCGACGACATCGCCGTGCGCCACGACTCGTATCTGGTGGACTGGTCCGGCATTCCGTACCTGCGGTTCCTGGCCAGCAA
CGTCGGCCGCGGCCAGCCGTTGGCGCACCGGCTGAGCGTGATGGCCACGCTGTTCGCCAACGCGCGCGGTCACATCTCCC
GGTTGATCCACTCGCACTGCGCCTCGGCGGCCCTGCTGGCCGATCGAATCGGCTTGGGCCCCAACGTACAAGCCGCGCTC
GCCTACACCTTCGAGCGCTACGACGGCGGCGGGCTGCCCACCGGCGCCCGCGGTGAGGACATCCCGATCCAGATGCGCAT
CGCGCAGCTGGCCGACATGGTCGAGGTGCACCACCGCAGCTACGGCGTGGCCGGGGCGGTGGCCATGGTCGGCGCCCGGC
GCGGCGGCCAGTTCGACCCCGGGATCGCGGACGTCTTTCTGCGGGACGCCGACGCGATCCTGGCCGGCCCGCAGACCGGC
GACGCGTGGGCGGCCGCGTTGCGCGAGGCGCCCGACCGCCACCGGGTGGACGAACAGTCGCTGGACGCGGCACTCGTCGC
GCTGGGCGACTTCGTCGACCTGAAATGCCCGTTCACACTTGGGCATTCGCGCGCGGTGGCCCGGCTCGCGGGGCAAGCCG
CGCGGGCCGCCGGGTTGGACGCCGACGCGGTGGCGCTGACCCGGCGCGCCGGCCATGTCCACGACCTGGGCCGCATCGGG
GTGTCGAACCAAATCTGGTCGCGGCCGGGGCCGTTGAGCGGATCGCAGTTCGAGCGGGTCCGGCTGCATCCGTATCTGAC
GGTGCGCATCCTCGACCAGGTTCCCGGGCTGCGGCGGCTGGCCGAGGTGGCCGGCAATCACCACGAATGCCTCGACGGCT
CGGGCTATCCCCGCGGCCTGGCCGGCCCGGCGCTGGGCATGCCGGACCGCATTCTGGCCGCCGCGGTGTGTTACCAGTCG
GGCCGCGAGCCGCGGCCGTACCGGGAGCAGCTGTCGGAGGCGGAGGCCGCGCGACGGCTGCGCGGGCGGGTGCGCTGCGG
CGAGCTCGACCCGGTCGCCGCCGAAGCGGTGCTGCACGCCGCCGGTCAGCCCGTCGGGCCGCGGCCCAACCCGCGCCCCG
ACGGGCTGACCCCCAGGGAGATCGAGGTGCTGGGGCACGTCGCGCGCGGCGCCTCCAACAAGGAGATCGCCGCCGCGCTG
GTGATCAGCGAGAAAACCGCCCGCAACCATGTCGAGCGGACCTACGCCAAGATCGGCGTGTCGAACCGGATCGGCGCCAG
CATGTATGCGCTGCAGCACGGGCTGGTGCCGGCCGCTCCGCTGCACAGTTGA

Upstream 100 bases:

>100_bases
GGTCGGCGGCGGGCATTTCGAGAACTTCGACCCGGGCCGTCATCACGCCGCGCCGCGCACCGTCGCAATCGGGTGACCCC
GCGCCGATCGGCTGGGCACA

Downstream 100 bases:

>100_bases
GGCAATCGCCCCATGTTCCCGGCGGCCGATCGGGTGCACAATCAGCTAATGAAACGCTATCTGGTCGTCGGCTATGGAGC
CGCCGCTTATCTGCTCTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MMLMAQAVLPTRAELLAALSVAIDLGLGQPAEHMLRAALIATRLCDRLGLSRQQRDCVYYTTLVMWIGCHADSHEYARWF
GDDIAVRHDSYLVDWSGIPYLRFLASNVGRGQPLAHRLSVMATLFANARGHISRLIHSHCASAALLADRIGLGPNVQAAL
AYTFERYDGGGLPTGARGEDIPIQMRIAQLADMVEVHHRSYGVAGAVAMVGARRGGQFDPGIADVFLRDADAILAGPQTG
DAWAAALREAPDRHRVDEQSLDAALVALGDFVDLKCPFTLGHSRAVARLAGQAARAAGLDADAVALTRRAGHVHDLGRIG
VSNQIWSRPGPLSGSQFERVRLHPYLTVRILDQVPGLRRLAEVAGNHHECLDGSGYPRGLAGPALGMPDRILAAAVCYQS
GREPRPYREQLSEAEAARRLRGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAAL
VISEKTARNHVERTYAKIGVSNRIGASMYALQHGLVPAAPLHS

Sequences:

>Translated_523_residues
MMLMAQAVLPTRAELLAALSVAIDLGLGQPAEHMLRAALIATRLCDRLGLSRQQRDCVYYTTLVMWIGCHADSHEYARWF
GDDIAVRHDSYLVDWSGIPYLRFLASNVGRGQPLAHRLSVMATLFANARGHISRLIHSHCASAALLADRIGLGPNVQAAL
AYTFERYDGGGLPTGARGEDIPIQMRIAQLADMVEVHHRSYGVAGAVAMVGARRGGQFDPGIADVFLRDADAILAGPQTG
DAWAAALREAPDRHRVDEQSLDAALVALGDFVDLKCPFTLGHSRAVARLAGQAARAAGLDADAVALTRRAGHVHDLGRIG
VSNQIWSRPGPLSGSQFERVRLHPYLTVRILDQVPGLRRLAEVAGNHHECLDGSGYPRGLAGPALGMPDRILAAAVCYQS
GREPRPYREQLSEAEAARRLRGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAAL
VISEKTARNHVERTYAKIGVSNRIGASMYALQHGLVPAAPLHS
>Mature_523_residues
MMLMAQAVLPTRAELLAALSVAIDLGLGQPAEHMLRAALIATRLCDRLGLSRQQRDCVYYTTLVMWIGCHADSHEYARWF
GDDIAVRHDSYLVDWSGIPYLRFLASNVGRGQPLAHRLSVMATLFANARGHISRLIHSHCASAALLADRIGLGPNVQAAL
AYTFERYDGGGLPTGARGEDIPIQMRIAQLADMVEVHHRSYGVAGAVAMVGARRGGQFDPGIADVFLRDADAILAGPQTG
DAWAAALREAPDRHRVDEQSLDAALVALGDFVDLKCPFTLGHSRAVARLAGQAARAAGLDADAVALTRRAGHVHDLGRIG
VSNQIWSRPGPLSGSQFERVRLHPYLTVRILDQVPGLRRLAEVAGNHHECLDGSGYPRGLAGPALGMPDRILAAAVCYQS
GREPRPYREQLSEAEAARRLRGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAAL
VISEKTARNHVERTYAKIGVSNRIGASMYALQHGLVPAAPLHS

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 56186; Mature: 56186

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLMAQAVLPTRAELLAALSVAIDLGLGQPAEHMLRAALIATRLCDRLGLSRQQRDCVYY
CCEEHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCHHHH
TTLVMWIGCHADSHEYARWFGDDIAVRHDSYLVDWSGIPYLRFLASNVGRGQPLAHRLSV
HHHHHHHHCCCCCHHHHHHHCCCEEEECCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHH
MATLFANARGHISRLIHSHCASAALLADRIGLGPNVQAALAYTFERYDGGGLPTGARGED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
IPIQMRIAQLADMVEVHHRSYGVAGAVAMVGARRGGQFDPGIADVFLRDADAILAGPQTG
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEECCCCC
DAWAAALREAPDRHRVDEQSLDAALVALGDFVDLKCPFTLGHSRAVARLAGQAARAAGLD
HHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
ADAVALTRRAGHVHDLGRIGVSNQIWSRPGPLSGSQFERVRLHPYLTVRILDQVPGLRRL
HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCEEEEHHHHHCCHHHHH
AEVAGNHHECLDGSGYPRGLAGPALGMPDRILAAAVCYQSGREPRPYREQLSEAEAARRL
HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
RGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAAL
HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHEEEE
VISEKTARNHVERTYAKIGVSNRIGASMYALQHGLVPAAPLHS
EEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MMLMAQAVLPTRAELLAALSVAIDLGLGQPAEHMLRAALIATRLCDRLGLSRQQRDCVYY
CCEEHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCHHHH
TTLVMWIGCHADSHEYARWFGDDIAVRHDSYLVDWSGIPYLRFLASNVGRGQPLAHRLSV
HHHHHHHHCCCCCHHHHHHHCCCEEEECCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHH
MATLFANARGHISRLIHSHCASAALLADRIGLGPNVQAALAYTFERYDGGGLPTGARGED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
IPIQMRIAQLADMVEVHHRSYGVAGAVAMVGARRGGQFDPGIADVFLRDADAILAGPQTG
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEECCCCC
DAWAAALREAPDRHRVDEQSLDAALVALGDFVDLKCPFTLGHSRAVARLAGQAARAAGLD
HHHHHHHHHCCHHHCCCHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
ADAVALTRRAGHVHDLGRIGVSNQIWSRPGPLSGSQFERVRLHPYLTVRILDQVPGLRRL
HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCEEEEHHHHHCCHHHHH
AEVAGNHHECLDGSGYPRGLAGPALGMPDRILAAAVCYQSGREPRPYREQLSEAEAARRL
HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
RGRVRCGELDPVAAEAVLHAAGQPVGPRPNPRPDGLTPREIEVLGHVARGASNKEIAAAL
HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHEEEE
VISEKTARNHVERTYAKIGVSNRIGASMYALQHGLVPAAPLHS
EEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]