Click here to switch to the map view.

The map label for this gene is desA3_1

Identifier: 41409441

GI number: 41409441

Start: 3711603

End: 3712886

Strand: Reverse

Name: desA3_1

Synonym: MAP3343c

Alternate gene names: 41409441

Gene position: 3712886-3711603 (Counterclockwise)

Preceding gene: 41409442

Following gene: 41409437

Centisome position: 76.87

GC content: 65.11

Gene sequence:

>1284_bases
ATGGCGATCACAGACGTCGACGTATTCGCCCATCTGACGGACGCCGATATCGAAAACCTGGCCGTTGAGCTCGATGCCAT
CCGCCAGGACGTGGAGGACTCGCGCGGCGAGCGGGACGCCCGCTACATCCGCCGCACCATCGCGGCCCAGCGCGCGCTGG
AGGTGACCGGCCGGCTGCTGCTGGCCGCCAGCTCGCGGCGCTCGGCGTGGTGGGCGGGGACGGTGACCCTGGGCGTGGCC
AAGATCATCGAGAACATGGAGATCGGCCACAACGTCATGCACGGGCAGTGGGACTGGATGAACGACCCCGAGATCCACTC
CTCGACGTGGGAGTGGGACATGAGCGGGTCGTCCAAGCACTGGCGGTACACCCACAACTTCGTGCACCACAAGTACACCA
ACATTCTCGGGATGGACGACGACGTCGGCTACGGCATGCTGCGCGTCACCCGCGACCAGCGCTGGAAGCGCTTCAACCTG
TTCAATCTGGTGTGGAACACGTTGCTGGCCTTGCTTTTTGAATGGGGAGTGGGCCTGCAGCACGTGGAGATCGGCAAGAT
CCTCAAGCGCCGGATGGACCACGAGGAAGCCCGGCAGCGGATCGACGAGTTCCTGGCCAAGGCGGGTCGCCAGGTGGTCA
AGGACTACGTCGCGTTCCCGGCGCTGACGTCACTGTCGCCCGGCGCGACCTTCCTGTCCACCTTGAAGGCCAACGCGATG
GCCAACGTGATCCGCAACGTGTGGGCCAACGCCGTCATCTTCTGCGGCCATTTCCCGGACGGCGCAGAGAAATTCACCAA
GACCGACATGATCGGCGAGACCAAGGGACAGTGGTACCTGCGCCAGATGCTGGGCAGCGCCAATTTCGAGGCCGGCCCGG
TGTTGCGGTTCATGAGCGGCAACCTGTGTCACCAGATCGAGCACCACCTGTACCCCGATCTGCCCAGCAACCGGTTGCAC
GAGATCTCGGTGCGGGTGCGTCAGGTCTGTGACAAGTACGACTTGCCTTACACCACAGGGTCTTTCCTGTTCCAGTACGC
GAAGACGTGGCGCACGCTGGCCAAGCTCTCGCTGCCGAACAAGTATCTGCGCGACGACGCCGACAACGCTCCGGAGACCC
GCAGCGAGCGGATGTTCGCTGAGCTGGATCCCGATTTCCTGGGCACCGATCCGGCTACCGGCCGTCGCCGCGGGCTCAAG
TCCGCGATCGCGGCCGTGCGCGGTTGGCGGCGCGGCAAGCGGGCGTCCGTGGCGCGTCGCACCGGCGGTGAGCTGGCGGC
CTAA

Upstream 100 bases:

>100_bases
AAGGCTACTCACAGGTAACCTACGGCGTCGTAGGTTACGATAGCGTAGGTCTGGGACGGATGAACGGACCGAACAATACG
ACCGCAGGGAGATGACGACG

Downstream 100 bases:

>100_bases
CCGCCCGTTGGCTTTTCGGGCCGGCCCAGCCTTCGCCGCACGTGTTCTCACGGCGAATATTTCGTGTTCTCACGGCGAAT
ATTTCGCCGATCTGTCGCGC

Product: DesA3_1

Products: NA

Alternate protein names: Delta(9)-desaturase; Stearoyl-CoA desaturase [H]

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MAITDVDVFAHLTDADIENLAVELDAIRQDVEDSRGERDARYIRRTIAAQRALEVTGRLLLAASSRRSAWWAGTVTLGVA
KIIENMEIGHNVMHGQWDWMNDPEIHSSTWEWDMSGSSKHWRYTHNFVHHKYTNILGMDDDVGYGMLRVTRDQRWKRFNL
FNLVWNTLLALLFEWGVGLQHVEIGKILKRRMDHEEARQRIDEFLAKAGRQVVKDYVAFPALTSLSPGATFLSTLKANAM
ANVIRNVWANAVIFCGHFPDGAEKFTKTDMIGETKGQWYLRQMLGSANFEAGPVLRFMSGNLCHQIEHHLYPDLPSNRLH
EISVRVRQVCDKYDLPYTTGSFLFQYAKTWRTLAKLSLPNKYLRDDADNAPETRSERMFAELDPDFLGTDPATGRRRGLK
SAIAAVRGWRRGKRASVARRTGGELAA

Sequences:

>Translated_427_residues
MAITDVDVFAHLTDADIENLAVELDAIRQDVEDSRGERDARYIRRTIAAQRALEVTGRLLLAASSRRSAWWAGTVTLGVA
KIIENMEIGHNVMHGQWDWMNDPEIHSSTWEWDMSGSSKHWRYTHNFVHHKYTNILGMDDDVGYGMLRVTRDQRWKRFNL
FNLVWNTLLALLFEWGVGLQHVEIGKILKRRMDHEEARQRIDEFLAKAGRQVVKDYVAFPALTSLSPGATFLSTLKANAM
ANVIRNVWANAVIFCGHFPDGAEKFTKTDMIGETKGQWYLRQMLGSANFEAGPVLRFMSGNLCHQIEHHLYPDLPSNRLH
EISVRVRQVCDKYDLPYTTGSFLFQYAKTWRTLAKLSLPNKYLRDDADNAPETRSERMFAELDPDFLGTDPATGRRRGLK
SAIAAVRGWRRGKRASVARRTGGELAA
>Mature_426_residues
AITDVDVFAHLTDADIENLAVELDAIRQDVEDSRGERDARYIRRTIAAQRALEVTGRLLLAASSRRSAWWAGTVTLGVAK
IIENMEIGHNVMHGQWDWMNDPEIHSSTWEWDMSGSSKHWRYTHNFVHHKYTNILGMDDDVGYGMLRVTRDQRWKRFNLF
NLVWNTLLALLFEWGVGLQHVEIGKILKRRMDHEEARQRIDEFLAKAGRQVVKDYVAFPALTSLSPGATFLSTLKANAMA
NVIRNVWANAVIFCGHFPDGAEKFTKTDMIGETKGQWYLRQMLGSANFEAGPVLRFMSGNLCHQIEHHLYPDLPSNRLHE
ISVRVRQVCDKYDLPYTTGSFLFQYAKTWRTLAKLSLPNKYLRDDADNAPETRSERMFAELDPDFLGTDPATGRRRGLKS
AIAAVRGWRRGKRASVARRTGGELAA

Specific function: Desaturates stearoyl-CoA to form oleoyl-CoA [H]

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable). Note=Has been shown to be membrane-associated but no reliable trans-membrane regions are predicted by bioinformatics tools [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: NA

Molecular weight: Translated: 48764; Mature: 48633

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITDVDVFAHLTDADIENLAVELDAIRQDVEDSRGERDARYIRRTIAAQRALEVTGRLL
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAASSRRSAWWAGTVTLGVAKIIENMEIGHNVMHGQWDWMNDPEIHSSTWEWDMSGSSKH
EEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
WRYTHNFVHHKYTNILGMDDDVGYGMLRVTRDQRWKRFNLFNLVWNTLLALLFEWGVGLQ
CCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
HVEIGKILKRRMDHEEARQRIDEFLAKAGRQVVKDYVAFPALTSLSPGATFLSTLKANAM
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ANVIRNVWANAVIFCGHFPDGAEKFTKTDMIGETKGQWYLRQMLGSANFEAGPVLRFMSG
HHHHHHHHHCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHCC
NLCHQIEHHLYPDLPSNRLHEISVRVRQVCDKYDLPYTTGSFLFQYAKTWRTLAKLSLPN
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCH
KYLRDDADNAPETRSERMFAELDPDFLGTDPATGRRRGLKSAIAAVRGWRRGKRASVARR
HHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
TGGELAA
CCCCCCC
>Mature Secondary Structure 
AITDVDVFAHLTDADIENLAVELDAIRQDVEDSRGERDARYIRRTIAAQRALEVTGRLL
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAASSRRSAWWAGTVTLGVAKIIENMEIGHNVMHGQWDWMNDPEIHSSTWEWDMSGSSKH
EEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
WRYTHNFVHHKYTNILGMDDDVGYGMLRVTRDQRWKRFNLFNLVWNTLLALLFEWGVGLQ
CCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
HVEIGKILKRRMDHEEARQRIDEFLAKAGRQVVKDYVAFPALTSLSPGATFLSTLKANAM
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ANVIRNVWANAVIFCGHFPDGAEKFTKTDMIGETKGQWYLRQMLGSANFEAGPVLRFMSG
HHHHHHHHHCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHCC
NLCHQIEHHLYPDLPSNRLHEISVRVRQVCDKYDLPYTTGSFLFQYAKTWRTLAKLSLPN
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCH
KYLRDDADNAPETRSERMFAELDPDFLGTDPATGRRRGLKSAIAAVRGWRRGKRASVARR
HHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
TGGELAA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]