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The map label for this gene is 41409438

Identifier: 41409438

GI number: 41409438

Start: 3709309

End: 3709974

Strand: Direct

Name: 41409438

Synonym: MAP3340

Alternate gene names: NA

Gene position: 3709309-3709974 (Clockwise)

Preceding gene: 41409436

Following gene: 41409439

Centisome position: 76.8

GC content: 70.27

Gene sequence:

>666_bases
GTGTATCGCCACTGTCCAGCTTTGACTACATTTGCTGCCATGAGGACTCACGGCTGGCAGGGCGAGCCGCCGCGCAGCGA
CGAGGATGCCGTCGCGCGGATCGTGGCGGCGGCCGACCGGTGCGTGCGGCGCCGCGGCGGGCAGACCACCATCGCCGACG
TCGCCGCCGAGCTCGGGGTCAGCCGGAAGACCGTGTACCGATACTTCCCCAGCACCACCGCGCTGCTGCGGGCGGTGGCC
ACCGAGGGCACCCGAAAGTTCTTGGAAGCCATGGCCGAACGCCTGAGCACGATCGACGACATCGCCGAGGCCGTCGTCGA
GGGCGTCGTCCTGACCGTCACCGCGGTGCCCGACGAGCCCTACCTCCAGCTCCTGCTGGAGGAGCCGTCCCACGCGCTGC
TGCGCAGCATCACGTCGGAGACAGCGCGCCGCGTCGGGCAACAGGTCCTGGTCGAGCACACCTCGGTCGACTGGGAGCGC
ACGCCGATGGCGTCGCGGACCCTCGACGAACTGGTCGAATGGTCGCTGCGCGCCGTGCACTCCTTTCTGGCCAACCCCAG
CGATCCGCCGCGCGACGCGGACCAGCTTCGCGGCTACCTGCGACGCTGGCTGGCCCCGGCGATCAGGCAATGGGTGCAAC
AGGCGGCGGCGGGGACGATTGTGTGA

Upstream 100 bases:

>100_bases
GTCGCTACATTGACCGCTCATCGTCGGGCGTCCTCAGTTCCAGGCGCACGCACAAGCTGCACGCGCTTACCGAAAGCTTG
ACGATACATGTCTAACAAAT

Downstream 100 bases:

>100_bases
CATTCGCTGACACTCGTCATTGACGATCGTCAGCGAAATGCCGTACGGTGCGTCCATGCAGTCACCAGCGACGCCGTCCG
CGAGGGGCGGCGGTATCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Regulatory Protein TetR; Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MYRHCPALTTFAAMRTHGWQGEPPRSDEDAVARIVAAADRCVRRRGGQTTIADVAAELGVSRKTVYRYFPSTTALLRAVA
TEGTRKFLEAMAERLSTIDDIAEAVVEGVVLTVTAVPDEPYLQLLLEEPSHALLRSITSETARRVGQQVLVEHTSVDWER
TPMASRTLDELVEWSLRAVHSFLANPSDPPRDADQLRGYLRRWLAPAIRQWVQQAAAGTIV

Sequences:

>Translated_221_residues
MYRHCPALTTFAAMRTHGWQGEPPRSDEDAVARIVAAADRCVRRRGGQTTIADVAAELGVSRKTVYRYFPSTTALLRAVA
TEGTRKFLEAMAERLSTIDDIAEAVVEGVVLTVTAVPDEPYLQLLLEEPSHALLRSITSETARRVGQQVLVEHTSVDWER
TPMASRTLDELVEWSLRAVHSFLANPSDPPRDADQLRGYLRRWLAPAIRQWVQQAAAGTIV
>Mature_221_residues
MYRHCPALTTFAAMRTHGWQGEPPRSDEDAVARIVAAADRCVRRRGGQTTIADVAAELGVSRKTVYRYFPSTTALLRAVA
TEGTRKFLEAMAERLSTIDDIAEAVVEGVVLTVTAVPDEPYLQLLLEEPSHALLRSITSETARRVGQQVLVEHTSVDWER
TPMASRTLDELVEWSLRAVHSFLANPSDPPRDADQLRGYLRRWLAPAIRQWVQQAAAGTIV

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24574; Mature: 24574

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRHCPALTTFAAMRTHGWQGEPPRSDEDAVARIVAAADRCVRRRGGQTTIADVAAELGV
CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
SRKTVYRYFPSTTALLRAVATEGTRKFLEAMAERLSTIDDIAEAVVEGVVLTVTAVPDEP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCH
YLQLLLEEPSHALLRSITSETARRVGQQVLVEHTSVDWERTPMASRTLDELVEWSLRAVH
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHH
SFLANPSDPPRDADQLRGYLRRWLAPAIRQWVQQAAAGTIV
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYRHCPALTTFAAMRTHGWQGEPPRSDEDAVARIVAAADRCVRRRGGQTTIADVAAELGV
CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
SRKTVYRYFPSTTALLRAVATEGTRKFLEAMAERLSTIDDIAEAVVEGVVLTVTAVPDEP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCH
YLQLLLEEPSHALLRSITSETARRVGQQVLVEHTSVDWERTPMASRTLDELVEWSLRAVH
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHH
SFLANPSDPPRDADQLRGYLRRWLAPAIRQWVQQAAAGTIV
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA