| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41409224
Identifier: 41409224
GI number: 41409224
Start: 3477152
End: 3477961
Strand: Reverse
Name: 41409224
Synonym: MAP3126c
Alternate gene names: NA
Gene position: 3477961-3477152 (Counterclockwise)
Preceding gene: 41409231
Following gene: 41409223
Centisome position: 72.01
GC content: 72.84
Gene sequence:
>810_bases GTGCTGGTCTGCCTGCCGGGCGGCACCTACAGCCGCGAGTACTGGGACCTCGACATCGCCGGCCATGACGGCTACAGCTT CGCCGATTTCGCCACCGGCAACGGCTACGCCGTGCTGACGGTCGATCCGTTGGGCACCGGCGAAAGTTCGCAGCCGGCAT CCGATTTCGGTTTCGCCGAGATCGGCGCCGCGCTGGACTGTGCGCTGCGCGCGCTGCCCGGAACCACCGGCGTGCAGGCG CCGGCGGTGGCGGTGGCGCATTCGCTGGGCGGCTACCTCGCCCTCACCCAGCAGGCGCTGTTCGGCGGTTACGCCGCCAT GGCGATGCTCGGGTGCACCAACCAGCACGTCGCGCCGCTGAACCTGGACCCGGCATTCCGCGCCCGCGCGGCCACCCCGC AAGGCCGCGCCGAGCTGGCCGCCGAGATCCTCGCCGCGCTGGCGCAGCCGTATTTCGCGGGGCCGCGCGAGCACCTGCAA GGCTGGTTCCACCTTGCCGACGTGCCCGCCGACATCGTCGCGGCGGACGCGGTCACCGCGGTGTCGGTGGTGCCGCGGGT GTTCGGCACGGCGATGATCCCCGGCATCGTGGCCGAGCACGCCGCCCGCATCGACGTCCCGGTGCTGCTCGGGTACGGCG TCGTCGACGTCTCCCCGGATCCGCGCGCCGAGGCCGCCCTGTACCGCAGCAGCCCCGACATCACCACCGTGGTGCTGGCC GGCAGCGCGCACTGCCACAACATGGCCTCGAGCCGGCATCGACTATGGCGGCGGCTGCTGGCCTGGGCGGCGACGGCGAT CGACGGCTAG
Upstream 100 bases:
>100_bases TACCGGGCACCCGGTCCGCTTCGACGTCAGCAGCGCGGTCGGGGAGCGGGCGTCGCTGGCGGCGACCTACTATCCGGCGC GCGGCGGCACGGCGGCCGCG
Downstream 100 bases:
>100_bases CCGCTTTTCCCGCACCGGCGATAATGGCATTCTCTGATGCGGAGAAGCCATTTCCGACCGTCACCGAGGAGGACGACGAT GAGCGGGCAGCGGTGCGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 269; Mature: 269
Protein sequence:
>269_residues MLVCLPGGTYSREYWDLDIAGHDGYSFADFATGNGYAVLTVDPLGTGESSQPASDFGFAEIGAALDCALRALPGTTGVQA PAVAVAHSLGGYLALTQQALFGGYAAMAMLGCTNQHVAPLNLDPAFRARAATPQGRAELAAEILAALAQPYFAGPREHLQ GWFHLADVPADIVAADAVTAVSVVPRVFGTAMIPGIVAEHAARIDVPVLLGYGVVDVSPDPRAEAALYRSSPDITTVVLA GSAHCHNMASSRHRLWRRLLAWAATAIDG
Sequences:
>Translated_269_residues MLVCLPGGTYSREYWDLDIAGHDGYSFADFATGNGYAVLTVDPLGTGESSQPASDFGFAEIGAALDCALRALPGTTGVQA PAVAVAHSLGGYLALTQQALFGGYAAMAMLGCTNQHVAPLNLDPAFRARAATPQGRAELAAEILAALAQPYFAGPREHLQ GWFHLADVPADIVAADAVTAVSVVPRVFGTAMIPGIVAEHAARIDVPVLLGYGVVDVSPDPRAEAALYRSSPDITTVVLA GSAHCHNMASSRHRLWRRLLAWAATAIDG >Mature_269_residues MLVCLPGGTYSREYWDLDIAGHDGYSFADFATGNGYAVLTVDPLGTGESSQPASDFGFAEIGAALDCALRALPGTTGVQA PAVAVAHSLGGYLALTQQALFGGYAAMAMLGCTNQHVAPLNLDPAFRARAATPQGRAELAAEILAALAQPYFAGPREHLQ GWFHLADVPADIVAADAVTAVSVVPRVFGTAMIPGIVAEHAARIDVPVLLGYGVVDVSPDPRAEAALYRSSPDITTVVLA GSAHCHNMASSRHRLWRRLLAWAATAIDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27963; Mature: 27963
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVCLPGGTYSREYWDLDIAGHDGYSFADFATGNGYAVLTVDPLGTGESSQPASDFGFAE CEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHH IGAALDCALRALPGTTGVQAPAVAVAHSLGGYLALTQQALFGGYAAMAMLGCTNQHVAPL HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC NLDPAFRARAATPQGRAELAAEILAALAQPYFAGPREHLQGWFHLADVPADIVAADAVTA CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH VSVVPRVFGTAMIPGIVAEHAARIDVPVLLGYGVVDVSPDPRAEAALYRSSPDITTVVLA HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEECCCCCCHHHHHCCCCCCEEEEEEE GSAHCHNMASSRHRLWRRLLAWAATAIDG CCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLVCLPGGTYSREYWDLDIAGHDGYSFADFATGNGYAVLTVDPLGTGESSQPASDFGFAE CEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHH IGAALDCALRALPGTTGVQAPAVAVAHSLGGYLALTQQALFGGYAAMAMLGCTNQHVAPL HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC NLDPAFRARAATPQGRAELAAEILAALAQPYFAGPREHLQGWFHLADVPADIVAADAVTA CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH VSVVPRVFGTAMIPGIVAEHAARIDVPVLLGYGVVDVSPDPRAEAALYRSSPDITTVVLA HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEECCCCCCHHHHHCCCCCCEEEEEEE GSAHCHNMASSRHRLWRRLLAWAATAIDG CCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA