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The map label for this gene is yijC [C]

Identifier: 41409197

GI number: 41409197

Start: 3446877

End: 3447617

Strand: Reverse

Name: yijC [C]

Synonym: MAP3099c

Alternate gene names: 41409197

Gene position: 3447617-3446877 (Counterclockwise)

Preceding gene: 41409198

Following gene: 41409196

Centisome position: 71.38

GC content: 68.02

Gene sequence:

>741_bases
ATGCCCCGACCTGCCAGGCCCCACTCGGCTACCAAGCCGGGGGCCAAGGTCGACGCGCGCAGCGAACGCTGGCGCGAGCA
CCGCAAGAAGGTCCGCAACGAGATCGTCGACGCTGCGTTTCGCGCCATCGACCGGCTCGGACCCGAGCTGTCCGTGCGCG
AGATCGCCGAAGAGGCCGGCACCGCCAAGCCCAAGATCTACCGGCATTTCCACGACAAGTCCGACCTGTTCCAGGCCATC
GGCGAGCGGCTGCGCGACATGCTGTGGACGGCGATCTTCCCGTCCATCGACCTGAAGACCGACTCGGCGCGCGAGGTGAT
CCGGCGCAGCGTCGAGGAGTACGTCACCCTGGTCGACAAGCATCCCAATGTGCTGCGGGTGTTCATCCAGGGGCGCTCGA
CGGGCACCCCCCAGTCGACGGTCACCATCCTCAACGAGGGCCGCGAGATCACCCTGGCCATGGCCGACCTGTTCGACAAC
GAGCTGCGCGAGATGGAGCTGGACCACGCGGCCGTCGAGCTGGCCGCCCATGCCGCCTTCGGGTCGGCGGCCTCGGCCAC
CGAGTGGTGGCTGGGCCCCGAACCGGACAGCCCGCGGCTGATGTCGCGGGCCCAGTTCGTCGCGCACCTGAGCACCATCA
TGATGGCGGTGATCATCGGCACCGCGGAGACACTGGGCATCACCATGAACCCTGACCAGCCGATTCACGACGCCGTGGTG
AGAAAGCCCGCGGTGAGCTGA

Upstream 100 bases:

>100_bases
GGCTCGAATTTCGCAACCAGCGCACGTTCGGCGAGGTGCGGACGCGCCGATCTGCCCAGGTCAGAAGCCGCCACCGGGTA
CAGTGCTTGACGTGGTGAGA

Downstream 100 bases:

>100_bases
GCCGCGCCCCGGCGTTGACAGCGCCGGGGCATATCGATAAAACTCGTCCAAACCGATACCCTGGGTACCGGGTATCTGCG
CCAGCGGGGTGGCTACGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MPRPARPHSATKPGAKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVREIAEEAGTAKPKIYRHFHDKSDLFQAI
GERLRDMLWTAIFPSIDLKTDSAREVIRRSVEEYVTLVDKHPNVLRVFIQGRSTGTPQSTVTILNEGREITLAMADLFDN
ELREMELDHAAVELAAHAAFGSAASATEWWLGPEPDSPRLMSRAQFVAHLSTIMMAVIIGTAETLGITMNPDQPIHDAVV
RKPAVS

Sequences:

>Translated_246_residues
MPRPARPHSATKPGAKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVREIAEEAGTAKPKIYRHFHDKSDLFQAI
GERLRDMLWTAIFPSIDLKTDSAREVIRRSVEEYVTLVDKHPNVLRVFIQGRSTGTPQSTVTILNEGREITLAMADLFDN
ELREMELDHAAVELAAHAAFGSAASATEWWLGPEPDSPRLMSRAQFVAHLSTIMMAVIIGTAETLGITMNPDQPIHDAVV
RKPAVS
>Mature_245_residues
PRPARPHSATKPGAKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVREIAEEAGTAKPKIYRHFHDKSDLFQAIG
ERLRDMLWTAIFPSIDLKTDSAREVIRRSVEEYVTLVDKHPNVLRVFIQGRSTGTPQSTVTILNEGREITLAMADLFDNE
LREMELDHAAVELAAHAAFGSAASATEWWLGPEPDSPRLMSRAQFVAHLSTIMMAVIIGTAETLGITMNPDQPIHDAVVR
KPAVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 27517; Mature: 27386

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPARPHSATKPGAKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVREIAEEAG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
TAKPKIYRHFHDKSDLFQAIGERLRDMLWTAIFPSIDLKTDSAREVIRRSVEEYVTLVDK
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
HPNVLRVFIQGRSTGTPQSTVTILNEGREITLAMADLFDNELREMELDHAAVELAAHAAF
CCCEEEEEEECCCCCCCHHHEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSAASATEWWLGPEPDSPRLMSRAQFVAHLSTIMMAVIIGTAETLGITMNPDQPIHDAVV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHH
RKPAVS
CCCCCC
>Mature Secondary Structure 
PRPARPHSATKPGAKVDARSERWREHRKKVRNEIVDAAFRAIDRLGPELSVREIAEEAG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
TAKPKIYRHFHDKSDLFQAIGERLRDMLWTAIFPSIDLKTDSAREVIRRSVEEYVTLVDK
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
HPNVLRVFIQGRSTGTPQSTVTILNEGREITLAMADLFDNELREMELDHAAVELAAHAAF
CCCEEEEEEECCCCCCCHHHEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSAASATEWWLGPEPDSPRLMSRAQFVAHLSTIMMAVIIGTAETLGITMNPDQPIHDAVV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHH
RKPAVS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]