| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is serB2
Identifier: 41409188
GI number: 41409188
Start: 3437140
End: 3438375
Strand: Reverse
Name: serB2
Synonym: MAP3090c
Alternate gene names: 41409188
Gene position: 3438375-3437140 (Counterclockwise)
Preceding gene: 41409189
Following gene: 41409187
Centisome position: 71.19
GC content: 71.84
Gene sequence:
>1236_bases GTGAACTCACCACCCAAGGTGTCGGTGCTGATCACCGTCACCGGCGTGGACCAGCCGGGCGTGACGGCGACCCTGTTCGA GGTGCTGTCGCGGCACGGGGTCGAGCTGCTCAACGTCGAACAGGTGGTGATCCGGCACCGGCTGACGCTGGGGGTGCTGG TGTGCTGCCCCGCCGACGTCGCCGACGGGCCCGCGCTGCGCCACGACGTGGAGGCGGCCATCCGCAAGGTCGGCCTGGAC GTCAGCATCGAACGCAGCGACGACGTGCCGATCATCCGGGAGCCCTCGACGCACACCATCTTCGTGCTGGGCCGGCCCAT CACCGCGGCCGCGTTCGGTGCGGTGGCCCGCGAGGTGGCCGCGCTGGGCGTCAACATCGACCTGATCCGTGGCGTGTCCG ACTATCCGGTGATCGGGCTGGAGCTGCGGGTCTCGGTGCCGCCGGGGGCCGACGGGGCGCTGCGCACCGCGCTGAACCGG GTGTCCAGCGAGGAGCACGTCGACGTCGCCGTCGAGGACTACACCCTGGAACGGCGGGCCAAGCGGCTCATCGTGTTCGA CGTGGACTCGACGCTGGTGCAGGGCGAGGTCATCGAGATGCTGGCGGCCAAGGCGGGCGCCGAGGGCCAGGTCGCCGCGA TCACCGACGCCGCGATGCGTGGCGAGCTGGACTTCGCGCAGTCGCTGCAGCAGCGGGTGGCCACGCTCGCCGGCCTGCCC GCCACGGTGATCGACGAGGTGGCCGGCCAGCTGGAGCTGATGCCCGGCGCCCGGACCACGCTGCGCACGCTGCGCCGGCT GGGGTATGCCTGCGGCGTGGTGTCCGGGGGCTTCCGCCGGATCATCGAGCCGCTGGCCGAGGAGCTGATGCTGGACTACG TGGCGGCCAATGAGCTGGAGATCGTGGACGGCACACTCACCGGCCGGGTGGTCGGTCCCATCATCGATCGGGCCGGAAAG GCCACGGCGCTAAGGGAATTCGCGCAGCGGGCCGGGGTGCCCATGGCGCAGACCGTCGCCGTGGGCGACGGCGCCAACGA CATCGACATGCTGGCCGCGGCCGGGCTGGGCATCGCGTTCAACGCCAAGCCGGCGCTGCGCGAGGTCGCCGACGCGTCGC TGAGCCACCCGTATCTGGACACGGTGCTGTTCCTGCTGGGGGTGACCCGCGGCGAGATCGAGGCCGCCGACGCGATCGAC GGCGAGGTGCGCCGGGTGGAGATCCCGCCGGAGTAA
Upstream 100 bases:
>100_bases GGCGCACGTGGGTCGCGCGCACGGCCCGGCGGACAAGGACGTCACCCGGCTGGACGACGTCCAGGTTCGCAGCTGATGGC CTGACGGGCGGCTGCCGGGC
Downstream 100 bases:
>100_bases GCGCGGCGAGTAATCGCGGCGACCCGGCAGGTGTGCGGGCGTCGCGGTACGGCACGATGGTCGGGTGCCCGAAAACGACA GTGCGGCAGCCGACCCTGAT
Product: SerB2
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MNSPPKVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLD VSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADGALRTALNR VSSEEHVDVAVEDYTLERRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLP ATVIDEVAGQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGK ATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLSHPYLDTVLFLLGVTRGEIEAADAID GEVRRVEIPPE
Sequences:
>Translated_411_residues MNSPPKVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLD VSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADGALRTALNR VSSEEHVDVAVEDYTLERRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLP ATVIDEVAGQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGK ATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLSHPYLDTVLFLLGVTRGEIEAADAID GEVRRVEIPPE >Mature_411_residues MNSPPKVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLD VSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADGALRTALNR VSSEEHVDVAVEDYTLERRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLP ATVIDEVAGQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGK ATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLSHPYLDTVLFLLGVTRGEIEAADAID GEVRRVEIPPE
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=212, Percent_Identity=28.7735849056604, Blast_Score=71, Evalue=2e-12, Organism=Escherichia coli, GI1790849, Length=255, Percent_Identity=43.921568627451, Blast_Score=186, Evalue=2e-48, Organism=Saccharomyces cerevisiae, GI6321647, Length=237, Percent_Identity=41.7721518987342, Blast_Score=181, Evalue=2e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 43439; Mature: 43439
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSPPKVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHEEEEECCCCC ADGPALRHDVEAAIRKVGLDVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVA CCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHH ALGVNIDLIRGVSDYPVIGLELRVSVPPGADGALRTALNRVSSEEHVDVAVEDYTLERRA HHCCCCEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHC KRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLP CEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHCCC ATVIDEVAGQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELE HHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE IVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAF EEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCEEE NAKPALREVADASLSHPYLDTVLFLLGVTRGEIEAADAIDGEVRRVEIPPE CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC >Mature Secondary Structure MNSPPKVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHEEEEECCCCC ADGPALRHDVEAAIRKVGLDVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVA CCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHH ALGVNIDLIRGVSDYPVIGLELRVSVPPGADGALRTALNRVSSEEHVDVAVEDYTLERRA HHCCCCEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHC KRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLP CEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHCCC ATVIDEVAGQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELE HHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE IVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAF EEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCEEE NAKPALREVADASLSHPYLDTVLFLLGVTRGEIEAADAIDGEVRRVEIPPE CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA