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The map label for this gene is 41409150

Identifier: 41409150

GI number: 41409150

Start: 3394935

End: 3395537

Strand: Reverse

Name: 41409150

Synonym: MAP3052c

Alternate gene names: NA

Gene position: 3395537-3394935 (Counterclockwise)

Preceding gene: 41409151

Following gene: 41409148

Centisome position: 70.3

GC content: 71.31

Gene sequence:

>603_bases
ATGGTGGGCGCTATGACCCAGACGGCCGATCGCTGCGAGCAGGCCTCGCCGTGGTCGCCGCGCGAGGCCGAGATCCTGGC
GGTGACCCTGCGGTTGCTGCAGGAACACGGCTATGACCAGTTGACGGTGGACGCGGTCGCCGGCGCCGCCCACGCCAGCA
AGGCCACCGTGTACCGGCGCTGGCCCTCCAAGGCCGAACTGGTGCTGGCCGCCTTCATCGAGGGCGTGCGCCAGGTGGCC
GTCCCGCCGAACACCGGCACGCTGCGCGGCGACCTGCTGGCCCTGGGGGAGACGGTCTGCGAGCAGGTCGGCCACCACGC
CAGCACCATCCGCGCGGTGATGTTCGAGGTGTCGCGGCACCCGGCGCTCAACGACGCGCTGCAGCACCAATTCCTGGACC
AGCGCCGGGCTTTGATCGAGCACGTGCTGCATCAGGCCGTCGACCGCGGCGAGATCAGCGCCGACGCCATCTCCGACGAA
CTCTGGGACCTGCTGCCCGGCTACCTGATCTTCCGGTCGATCGTGCCCACCCGGCCGCCCAGTCGCCGCACCGTGCAGGC
GCTGGTCGACGGGTTCCTCATCCCCGGCCTGACCGCGCGCTGA

Upstream 100 bases:

>100_bases
GAGCGGGCCCTGCTGACCCTGCGCTGACGGACCTTTGCAGCCGTGGCCATCCGGCGAGGTTCGCGGCGCCGAAATTCGTC
GGCACCGGCCGAGCACATCT

Downstream 100 bases:

>100_bases
CCCGGCGCGGCTACGGGGAGAATGCCCAGCGCGTCGCGCCGTGCGGTTCGGTGAGCGCGACCCCGACCGCGGCGCGCAGC
ACGAATCGGTACAGATGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MVGAMTQTADRCEQASPWSPREAEILAVTLRLLQEHGYDQLTVDAVAGAAHASKATVYRRWPSKAELVLAAFIEGVRQVA
VPPNTGTLRGDLLALGETVCEQVGHHASTIRAVMFEVSRHPALNDALQHQFLDQRRALIEHVLHQAVDRGEISADAISDE
LWDLLPGYLIFRSIVPTRPPSRRTVQALVDGFLIPGLTAR

Sequences:

>Translated_200_residues
MVGAMTQTADRCEQASPWSPREAEILAVTLRLLQEHGYDQLTVDAVAGAAHASKATVYRRWPSKAELVLAAFIEGVRQVA
VPPNTGTLRGDLLALGETVCEQVGHHASTIRAVMFEVSRHPALNDALQHQFLDQRRALIEHVLHQAVDRGEISADAISDE
LWDLLPGYLIFRSIVPTRPPSRRTVQALVDGFLIPGLTAR
>Mature_200_residues
MVGAMTQTADRCEQASPWSPREAEILAVTLRLLQEHGYDQLTVDAVAGAAHASKATVYRRWPSKAELVLAAFIEGVRQVA
VPPNTGTLRGDLLALGETVCEQVGHHASTIRAVMFEVSRHPALNDALQHQFLDQRRALIEHVLHQAVDRGEISADAISDE
LWDLLPGYLIFRSIVPTRPPSRRTVQALVDGFLIPGLTAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21954; Mature: 21954

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGAMTQTADRCEQASPWSPREAEILAVTLRLLQEHGYDQLTVDAVAGAAHASKATVYRR
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
WPSKAELVLAAFIEGVRQVAVPPNTGTLRGDLLALGETVCEQVGHHASTIRAVMFEVSRH
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PALNDALQHQFLDQRRALIEHVLHQAVDRGEISADAISDELWDLLPGYLIFRSIVPTRPP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SRRTVQALVDGFLIPGLTAR
CHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVGAMTQTADRCEQASPWSPREAEILAVTLRLLQEHGYDQLTVDAVAGAAHASKATVYRR
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
WPSKAELVLAAFIEGVRQVAVPPNTGTLRGDLLALGETVCEQVGHHASTIRAVMFEVSRH
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
PALNDALQHQFLDQRRALIEHVLHQAVDRGEISADAISDELWDLLPGYLIFRSIVPTRPP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SRRTVQALVDGFLIPGLTAR
CHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]