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The map label for this gene is xerC [H]

Identifier: 41409062

GI number: 41409062

Start: 3300282

End: 3301400

Strand: Reverse

Name: xerC [H]

Synonym: MAP2964c

Alternate gene names: 41409062

Gene position: 3301400-3300282 (Counterclockwise)

Preceding gene: 41409063

Following gene: 41409061

Centisome position: 68.36

GC content: 62.65

Gene sequence:

>1119_bases
GTGACGTTATCGGCGCCTGGTTCGGCGCATCTGGTGTTGGCGCAGAACGTGGTTCACCTCGATCAGGCTGCGGCGGTGTT
CGAGGCGATGTTGGAGGGCTGGCGCCGCCAGCAATCAGCGCGTTTCCTGCGAGCGGGCACGATCGGCGCCAGGCTGCGGT
TGATTCGCCGGCTGGAAGCGTTCAGCGGGCTGTATCCGTGGCAATGGGCGCCGGCCGACGGCGAGGCGTTCATCGATCAC
TTGCGGTCGACGACGGTGGAGGCGGTGTCGACGGCGAGGTCCTACGAGATCGATATCAGCCTGTTTATGGAGTACTTGCT
GGATCCCCGCTACGGCTGGGCCGGTGTGTGTGCCGATCAGTTCGGCGATGTCCCGCAGGCGATCTTCCATGAGGGCAATT
CGATTCAGCACAAGCTGGACTACGAGGGTGATCCCCGGCGTCGCCCGCTTAGCTATGACGAGATCCAAGCGCTCTTTGAC
GCAGCGGATGCCCGCTCAGGCACAATCCAGGGTCGCGGCGTGAAGGGCGCGTTGGGAGCCGCGCGGGATGCCGCGGTTTT
GAAAACTATCTACGCCTTTGGCCTTCGCAGAACCGAGGCGTCTCGGCTGGACCTGGTCGATCTGCGCCGTAACAGCCAAG
CACCACAATTCGGTGGCTTCGGGGTGGTGATGGTCCGCTACGGCAAGGCCCCGAAGGGAGCACCGCCTAAGCGGCGCACT
GTGCTGCTCGTCCCCGAGATGGACTGGGTGGTCGAGACATTGGACCAGTGGCTCACCGAGATCCGTCCACGGTTTTCACC
GCCGGATCGCCACCCGGCGCTGTGGGTGACCGAGCGCGGGGGCCGGCTATCTCCACGATCGATCAACGAAGCGTTTGTGG
CCGCTCGTGACGACGCGAGGTTAGACCGTTCACTGAATCTGCATTGCCTTCGCCACTCTGCAGTAACGCACTGGACCGAA
TTCGGTTATCCCGCAAGGTTTGTCCAGGAACAGGTGGGTCATGCGCATGCTTCGACGACGTCGATCTACACCCATGTCTC
TAATGAATACCGCAACAAGCTGCTGAAGGCCTCGCTGATGGGCCGTCTCGGCGACCACTGGGATGGAGCACCGACATGA

Upstream 100 bases:

>100_bases
GTGGTGGAGACCGGTGGTGGATTCCGGGATCGGAGCGTTGGGGCCGTGATCAGCCATGTCACTTCCAACGCATCGTCATT
GCATCTGATACAACAGAGCG

Downstream 100 bases:

>100_bases
TCAAGAAGATGGGTTATCGCTGGCGGCTGCGTGACTTGATGGCCGATCAGCAGATGTTTAAGACCACTGATCTGATTCCG
CACCTGGTGGAGCGCGGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MTLSAPGSAHLVLAQNVVHLDQAAAVFEAMLEGWRRQQSARFLRAGTIGARLRLIRRLEAFSGLYPWQWAPADGEAFIDH
LRSTTVEAVSTARSYEIDISLFMEYLLDPRYGWAGVCADQFGDVPQAIFHEGNSIQHKLDYEGDPRRRPLSYDEIQALFD
AADARSGTIQGRGVKGALGAARDAAVLKTIYAFGLRRTEASRLDLVDLRRNSQAPQFGGFGVVMVRYGKAPKGAPPKRRT
VLLVPEMDWVVETLDQWLTEIRPRFSPPDRHPALWVTERGGRLSPRSINEAFVAARDDARLDRSLNLHCLRHSAVTHWTE
FGYPARFVQEQVGHAHASTTSIYTHVSNEYRNKLLKASLMGRLGDHWDGAPT

Sequences:

>Translated_372_residues
MTLSAPGSAHLVLAQNVVHLDQAAAVFEAMLEGWRRQQSARFLRAGTIGARLRLIRRLEAFSGLYPWQWAPADGEAFIDH
LRSTTVEAVSTARSYEIDISLFMEYLLDPRYGWAGVCADQFGDVPQAIFHEGNSIQHKLDYEGDPRRRPLSYDEIQALFD
AADARSGTIQGRGVKGALGAARDAAVLKTIYAFGLRRTEASRLDLVDLRRNSQAPQFGGFGVVMVRYGKAPKGAPPKRRT
VLLVPEMDWVVETLDQWLTEIRPRFSPPDRHPALWVTERGGRLSPRSINEAFVAARDDARLDRSLNLHCLRHSAVTHWTE
FGYPARFVQEQVGHAHASTTSIYTHVSNEYRNKLLKASLMGRLGDHWDGAPT
>Mature_371_residues
TLSAPGSAHLVLAQNVVHLDQAAAVFEAMLEGWRRQQSARFLRAGTIGARLRLIRRLEAFSGLYPWQWAPADGEAFIDHL
RSTTVEAVSTARSYEIDISLFMEYLLDPRYGWAGVCADQFGDVPQAIFHEGNSIQHKLDYEGDPRRRPLSYDEIQALFDA
ADARSGTIQGRGVKGALGAARDAAVLKTIYAFGLRRTEASRLDLVDLRRNSQAPQFGGFGVVMVRYGKAPKGAPPKRRTV
LLVPEMDWVVETLDQWLTEIRPRFSPPDRHPALWVTERGGRLSPRSINEAFVAARDDARLDRSLNLHCLRHSAVTHWTEF
GYPARFVQEQVGHAHASTTSIYTHVSNEYRNKLLKASLMGRLGDHWDGAPT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=171, Percent_Identity=33.9181286549708, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41655; Mature: 41523

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00399 SUCCINYL_COA_LIG_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSAPGSAHLVLAQNVVHLDQAAAVFEAMLEGWRRQQSARFLRAGTIGARLRLIRRLEA
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FSGLYPWQWAPADGEAFIDHLRSTTVEAVSTARSYEIDISLFMEYLLDPRYGWAGVCADQ
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEHHHHHHHHHHCCCCCCHHHCHHH
FGDVPQAIFHEGNSIQHKLDYEGDPRRRPLSYDEIQALFDAADARSGTIQGRGVKGALGA
HCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCC
ARDAAVLKTIYAFGLRRTEASRLDLVDLRRNSQAPQFGGFGVVMVRYGKAPKGAPPKRRT
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCE
VLLVPEMDWVVETLDQWLTEIRPRFSPPDRHPALWVTERGGRLSPRSINEAFVAARDDAR
EEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHH
LDRSLNLHCLRHSAVTHWTEFGYPARFVQEQVGHAHASTTSIYTHVSNEYRNKLLKASLM
HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHH
GRLGDHWDGAPT
HHHCCCCCCCCC
>Mature Secondary Structure 
TLSAPGSAHLVLAQNVVHLDQAAAVFEAMLEGWRRQQSARFLRAGTIGARLRLIRRLEA
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FSGLYPWQWAPADGEAFIDHLRSTTVEAVSTARSYEIDISLFMEYLLDPRYGWAGVCADQ
HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEHHHHHHHHHHCCCCCCHHHCHHH
FGDVPQAIFHEGNSIQHKLDYEGDPRRRPLSYDEIQALFDAADARSGTIQGRGVKGALGA
HCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHCC
ARDAAVLKTIYAFGLRRTEASRLDLVDLRRNSQAPQFGGFGVVMVRYGKAPKGAPPKRRT
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCE
VLLVPEMDWVVETLDQWLTEIRPRFSPPDRHPALWVTERGGRLSPRSINEAFVAARDDAR
EEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHH
LDRSLNLHCLRHSAVTHWTEFGYPARFVQEQVGHAHASTTSIYTHVSNEYRNKLLKASLM
HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHH
GRLGDHWDGAPT
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA