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The map label for this gene is yifB [C]

Identifier: 41409060

GI number: 41409060

Start: 3295875

End: 3297386

Strand: Reverse

Name: yifB [C]

Synonym: MAP2962c

Alternate gene names: 41409060

Gene position: 3297386-3295875 (Counterclockwise)

Preceding gene: 41409061

Following gene: 41409059

Centisome position: 68.27

GC content: 74.6

Gene sequence:

>1512_bases
ATGGCGCTGGGACGCGCGTTCTCCGTCGCGGTGCGCGGCGTGGACGGACAGATCGTGGAGATCGAGGCCGACATCACGTC
CGGTCTGCCCGGCGTGCATCTGGTGGGGTTGCCGGACGCCGCGCTGCAGGAGTCGCGCGACCGGGTCCGGGCGGCGGTCA
GCAACTGCACCAACAACTGGCCGCAGGCGCGACTGACGCTGGCGCTGTCGCCGGCGACGCTGCCGAAAATGGGCAGCGTC
TACGACATCGCTCTGGCGTCGGCGGTGCTGTCGGCGCAGCGGAAGAACCCGTGGCACCGGCTGGACAAGACGGTGCTGCT
GGGCGAGCTGTCGCTGGACGGGCGGGTCCGGCCGGTGCGCGGGGTGCTGCCCGCGGTGCTGGCCGCCAAGCGCGACGGCT
GGCCGGCCGTGGTGGTCCCGGCCGACAACCTGGCCGAGGCCAGCCTGGTCGACGGCATCGACGTGTGGGGCGTGCGCACG
CTGGGCCAGCTGCAGGACTGGCTGAGCGGCACCGGCGCCCTGGACGGCCGGATCGAGCCGGACACCACCGTCCCGGAGCC
GACGGCGGATCTGGTCGACGTGGTCGGGCAGACGCAGGCCCGGTTCGCGGTGGAGTTGGCGGCGGCCGGGGCCCACCACC
TGATGCTCACCGGCCCGCCGGGGGTGGGCAAAACGATGCTCGCGCAACGCCTTCCGGGGCTGCTGCCGCCGCTGACGGAG
AGCGAGTCGCTGGAAGTCACCGCGATTCACTCGGTGGCCGGGCTGCTGTCGGGGGACACGCCGTTGATCACCCGGCCGCC
GTTCGTGGCGCCGCATCACAGCTCCAGCGTCGCGGCGCTGGTCGGCGGCGGCTCCGGGATGGCCCGCCCGGGCGCGGTCA
GCCGGGCCCATCGCGGGGTGCTGTTCCTCGACGAGTGCGCCGAGATCCGGCTCAGCGCGCTGGAGGCGCTGCGAACACCG
TTGGAGGACGGCGAGATTCGGCTGGCCCGCCGCGACGGCGTGGCCTGCTACCCGGCCCGCTTCCAGCTGGTGCTGGCCGC
CAACCTGTGCCCGTGCGCGCCGGCCGATCCGCAGGACTGCGTCTGCGCGGCGGTCGCCAAGCGGCGCTACCTGGGCAAGC
TGTCCGGGCCGCTGCTGGACCGGGTGGACCTGCGGGTGCAGATGCATCCGATGCGGGCCGGCGCGTTCGGCGGCGGCGAC
GGCGAATCCACCGCGCAGGTCCGCCGGCGGGTCGCGCAGGCGCGGCAGGCCGCGGCGCAGCGCTGGCTGCCGTACGGGTT
TCGCACCAACGCCGAGGTGAGCGGGCCGCTGCTGCGCCGCAAGTTCCGGCTGGGCAGCGCGGCGATGGATCCGCTGCAGA
AGGCGCTGGACCGCGGACTGCTCAGCATCCGGGGCCTGGACCGCACCCTGCGGGTCGCGTGGAGCGTGGCCGACCTGGCC
GGGCGCACATCGCCGGGACCCGAGGAGGTCGCCACCGCGCTGAGCTTTCGCCAGGCGGGGGCGCAGCGATGA

Upstream 100 bases:

>100_bases
GCCAGGACCGGGGCTGGGCGGCCATCCGCATCGACGTGATCGGCGTGCGGGTGGGGCGCCGCCGCACCCCGGAGATCACG
CATCTGCAGGGGATCGGCTG

Downstream 100 bases:

>100_bases
ACGCGGCGGCGCGCCGACGGGCCGGGTCACCAGCGCAGCAGGGTCAGCCAGTCGGTGTGCCCGCCGCGCAGCGCGATCGC
GACGGTCACCAGGATCGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MALGRAFSVAVRGVDGQIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVSNCTNNWPQARLTLALSPATLPKMGSV
YDIALASAVLSAQRKNPWHRLDKTVLLGELSLDGRVRPVRGVLPAVLAAKRDGWPAVVVPADNLAEASLVDGIDVWGVRT
LGQLQDWLSGTGALDGRIEPDTTVPEPTADLVDVVGQTQARFAVELAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPPLTE
SESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGVLFLDECAEIRLSALEALRTP
LEDGEIRLARRDGVACYPARFQLVLAANLCPCAPADPQDCVCAAVAKRRYLGKLSGPLLDRVDLRVQMHPMRAGAFGGGD
GESTAQVRRRVAQARQAAAQRWLPYGFRTNAEVSGPLLRRKFRLGSAAMDPLQKALDRGLLSIRGLDRTLRVAWSVADLA
GRTSPGPEEVATALSFRQAGAQR

Sequences:

>Translated_503_residues
MALGRAFSVAVRGVDGQIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVSNCTNNWPQARLTLALSPATLPKMGSV
YDIALASAVLSAQRKNPWHRLDKTVLLGELSLDGRVRPVRGVLPAVLAAKRDGWPAVVVPADNLAEASLVDGIDVWGVRT
LGQLQDWLSGTGALDGRIEPDTTVPEPTADLVDVVGQTQARFAVELAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPPLTE
SESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGVLFLDECAEIRLSALEALRTP
LEDGEIRLARRDGVACYPARFQLVLAANLCPCAPADPQDCVCAAVAKRRYLGKLSGPLLDRVDLRVQMHPMRAGAFGGGD
GESTAQVRRRVAQARQAAAQRWLPYGFRTNAEVSGPLLRRKFRLGSAAMDPLQKALDRGLLSIRGLDRTLRVAWSVADLA
GRTSPGPEEVATALSFRQAGAQR
>Mature_502_residues
ALGRAFSVAVRGVDGQIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVSNCTNNWPQARLTLALSPATLPKMGSVY
DIALASAVLSAQRKNPWHRLDKTVLLGELSLDGRVRPVRGVLPAVLAAKRDGWPAVVVPADNLAEASLVDGIDVWGVRTL
GQLQDWLSGTGALDGRIEPDTTVPEPTADLVDVVGQTQARFAVELAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPPLTES
ESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGVLFLDECAEIRLSALEALRTPL
EDGEIRLARRDGVACYPARFQLVLAANLCPCAPADPQDCVCAAVAKRRYLGKLSGPLLDRVDLRVQMHPMRAGAFGGGDG
ESTAQVRRRVAQARQAAAQRWLPYGFRTNAEVSGPLLRRKFRLGSAAMDPLQKALDRGLLSIRGLDRTLRVAWSVADLAG
RTSPGPEEVATALSFRQAGAQR

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=499, Percent_Identity=38.4769539078156, Blast_Score=300, Evalue=1e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 53148; Mature: 53017

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGRAFSVAVRGVDGQIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVSNCTNNW
CCCCCEEEEEEECCCCEEEEEEEHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC
PQARLTLALSPATLPKMGSVYDIALASAVLSAQRKNPWHRLDKTVLLGELSLDGRVRPVR
CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHH
GVLPAVLAAKRDGWPAVVVPADNLAEASLVDGIDVWGVRTLGQLQDWLSGTGALDGRIEP
HHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
DTTVPEPTADLVDVVGQTQARFAVELAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPPLTE
CCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCC
SESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGV
CCCEEEEEHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCE
LFLDECAEIRLSALEALRTPLEDGEIRLARRDGVACYPARFQLVLAANLCPCAPADPQDC
EEEHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEHHHEEEEEECCCCCCCCCCHHHH
VCAAVAKRRYLGKLSGPLLDRVDLRVQMHPMRAGAFGGGDGESTAQVRRRVAQARQAAAQ
HHHHHHHHHHHHHHCCCHHHCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RWLPYGFRTNAEVSGPLLRRKFRLGSAAMDPLQKALDRGLLSIRGLDRTLRVAWSVADLA
HCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHC
GRTSPGPEEVATALSFRQAGAQR
CCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALGRAFSVAVRGVDGQIVEIEADITSGLPGVHLVGLPDAALQESRDRVRAAVSNCTNNW
CCCCEEEEEEECCCCEEEEEEEHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC
PQARLTLALSPATLPKMGSVYDIALASAVLSAQRKNPWHRLDKTVLLGELSLDGRVRPVR
CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHH
GVLPAVLAAKRDGWPAVVVPADNLAEASLVDGIDVWGVRTLGQLQDWLSGTGALDGRIEP
HHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
DTTVPEPTADLVDVVGQTQARFAVELAAAGAHHLMLTGPPGVGKTMLAQRLPGLLPPLTE
CCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCC
SESLEVTAIHSVAGLLSGDTPLITRPPFVAPHHSSSVAALVGGGSGMARPGAVSRAHRGV
CCCEEEEEHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCE
LFLDECAEIRLSALEALRTPLEDGEIRLARRDGVACYPARFQLVLAANLCPCAPADPQDC
EEEHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEHHHEEEEEECCCCCCCCCCHHHH
VCAAVAKRRYLGKLSGPLLDRVDLRVQMHPMRAGAFGGGDGESTAQVRRRVAQARQAAAQ
HHHHHHHHHHHHHHCCCHHHCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RWLPYGFRTNAEVSGPLLRRKFRLGSAAMDPLQKALDRGLLSIRGLDRTLRVAWSVADLA
HCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHC
GRTSPGPEEVATALSFRQAGAQR
CCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]