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The map label for this gene is xerC

Identifier: 41409056

GI number: 41409056

Start: 3291276

End: 3292181

Strand: Reverse

Name: xerC

Synonym: MAP2958c

Alternate gene names: 41409056

Gene position: 3292181-3291276 (Counterclockwise)

Preceding gene: 41409057

Following gene: 41409054

Centisome position: 68.16

GC content: 75.39

Gene sequence:

>906_bases
GTGCCGGACAGCGAACCGATCCTCGAGGAGTTCGACGAGTACCTGGCGCTGCAGTGCGGGCGTTCGGCGCACACCCGCCG
CGCCTACCTCGGCGACCTGCGCTCGCTGCTGGCCTTCGCCGGTGAGCGCGGCACGGGCCTGGACGGGCTGAGCCTGCCCC
TGCTGCGCTCCTGGCTGTCCGCGGCCGCCGCCGGCGGCGTCGCCCGCACCACGCTGGCCCGCCGCACCTCGGCGGTCAAG
GCGTTCACCGCCTGGGCCGTGCGGCGCGGCCTGCTGACCGCGGACCCGGCGGCTCGGCTGCAGGTGCCCAAGACGCACCG
CACCCTGCCCGCGGTGCTGCGCCAGGACCAGGCGCTGGGCGCCATGGCTGCCGCTAAAACCGGTGCGGCACAAGGAGATC
CGATCGCGCTGCGGGACCGGCTGATCGTCGAGATGCTGTATGCCACCGGGATCCGGGTCAGCGAACTGTGCGGCCTGGAC
ATCGACGACGTGGACACCGGGCGCCGGCTGGTCCGCGTCCTGGGCAAGGGCAACAAGCAGCGCAGCGTCCCGTTCGGGGC
GCCGGCCGGCGAGGCGCTGCACGCGTGGCTGGCCGACGGGCGGCCCGCCCTGGCGAACGCGGAGTCCGGCCCGGCGCTGC
TGCTGGGCGCCCGCGGCCGCCGGCTCGACGTCCGCCAGGCCCGCACCGTGGTGCACCAGACGATCGCGGCGGTCAGCGGC
GCGCCGGACATGGGACCGCACGGGCTGCGCCACAGCGCGGCCACCCACCTCCTGGAAGGCGGCGCCGACCTGCGGGTGGT
CCAGGAACTGCTGGGTCATTCCAGCCTGGCCACCACCCAGCTCTACACCCATGTCGCGGTCTCGCGGCTGCGCGCCGTGC
ACGACCAGGCCCATCCGCGGGCCTGA

Upstream 100 bases:

>100_bases
CATGGCCGTCGACGGATATCCGACGCGCAAAGATCTCACCCCGGACACGCTTCGGCGCGTCGTCTGAGTCCGGCCGCCCG
GTTTCTGCCAGCGTGGGGGA

Downstream 100 bases:

>100_bases
CCGGCGCGCGTCGAGTGTGAACCCTGGGCGGCGACACGCCGACGATCCGCGCCGCGATGCAACACCGAACGCCGAGGTGC
AACACTCGAGCGCGCTCAAC

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MPDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVARTTLARRTSAVK
AFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKTGAAQGDPIALRDRLIVEMLYATGIRVSELCGLD
IDDVDTGRRLVRVLGKGNKQRSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSG
APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA

Sequences:

>Translated_301_residues
MPDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVARTTLARRTSAVK
AFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKTGAAQGDPIALRDRLIVEMLYATGIRVSELCGLD
IDDVDTGRRLVRVLGKGNKQRSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSG
APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA
>Mature_300_residues
PDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVARTTLARRTSAVKA
FTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKTGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDI
DDVDTGRRLVRVLGKGNKQRSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGA
PDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=296, Percent_Identity=40.5405405405405, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1790244, Length=302, Percent_Identity=35.4304635761589, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1790767, Length=174, Percent_Identity=29.3103448275862, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790768, Length=155, Percent_Identity=30.9677419354839, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 31933; Mature: 31802

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLS
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
AAAAGGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEECCHHHHHHHHHHHHHHHHH
AMAAAKTGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQ
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCC
RSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSG
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPR
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
A
C
>Mature Secondary Structure 
PDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLS
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
AAAAGGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEECCHHHHHHHHHHHHHHHHH
AMAAAKTGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQ
HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCC
RSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSG
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
APDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPR
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]