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The map label for this gene is glnR [H]

Identifier: 41409046

GI number: 41409046

Start: 3282431

End: 3283192

Strand: Direct

Name: glnR [H]

Synonym: MAP2948

Alternate gene names: 41409046

Gene position: 3282431-3283192 (Clockwise)

Preceding gene: 41409045

Following gene: 41409049

Centisome position: 67.96

GC content: 69.29

Gene sequence:

>762_bases
CTGTCAGACATCTCCCGCAGAGGTGCCTACGGACCGGGGGAAGCGAGAACCTCACGAGGTTTGGAGATGTCGTTGGACGT
GGTGGTCCTCACCAACGAGGACGATTTCGAATCGGCGCTACCCGATCTGAGCAGATTCGCCCGCCCGGCACGCCGCGCCG
CGCTGAGCACCGACGGCGACGGGCAATTCGGCCCCGCGGATGTGGCGATCATCGACGCGCGCAGCAACGTGGCCGCCGCC
CAGGCGGTGAGCCACCGGCTGACGGCCGATCATCCGGCGACCGCCGTGGTGGCGCTGGTCGCCCCGGCCGATTGCGCGGC
GGTGGACGTCGACTGCAATTTCGACGACGTGATGCTGCCCGGCACCTGCGCCGAGGAGTTGCAGGCGCGGCTGCGGCTGG
CCATCGGGCGCCGCCGCGGCGGCCTGGACGGCACCCTGAAATTCGGCGATCTGTTGCTGCACCCGGCCAGCTTCACCGCG
TCGCTGGACGGCCGGGAACTGAATCTGACCCTGACCGAGTTCAAACTCCTGAATTTCCTTGTGCAGCATGCCGGTCAGGC
GTTCACGCGGACCCGGCTGATGCAACAGGCGTGGGGCTATGAGGGCAACGGGCGGGCCCGCACCGTCGACGTGCACATCC
GGCGGCTGCGCGCCAAGCTGGGCACCCGGCACCAGTCGCTGGTCGGCACGGTCCGCGGAGTCGGCTACCGGGCGCCGACG
CCACCGCAGCCGGAATGGATCGTTGGGCACCAGAAGCCCTGA

Upstream 100 bases:

>100_bases
CGCTGGAAAAGATGGGTCCGGTCCGTGAAAATGGGCCGGGCCCATCGCTTTTCTGGGATCGCCTGCATAGTTTTCGGCGG
GGCGGGTATCCAGTACGGCG

Downstream 100 bases:

>100_bases
GCGGCAACACCTTTCGATGAGGATCAGCCGAAGACCGGGAATGCCCGCCGGCGCGCCAGCGCGTCCATTCCCTGCTGGAT
CGAGTCCTGCACCTCCCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSDISRRGAYGPGEARTSRGLEMSLDVVVLTNEDDFESALPDLSRFARPARRAALSTDGDGQFGPADVAIIDARSNVAAA
QAVSHRLTADHPATAVVALVAPADCAAVDVDCNFDDVMLPGTCAEELQARLRLAIGRRRGGLDGTLKFGDLLLHPASFTA
SLDGRELNLTLTEFKLLNFLVQHAGQAFTRTRLMQQAWGYEGNGRARTVDVHIRRLRAKLGTRHQSLVGTVRGVGYRAPT
PPQPEWIVGHQKP

Sequences:

>Translated_253_residues
MSDISRRGAYGPGEARTSRGLEMSLDVVVLTNEDDFESALPDLSRFARPARRAALSTDGDGQFGPADVAIIDARSNVAAA
QAVSHRLTADHPATAVVALVAPADCAAVDVDCNFDDVMLPGTCAEELQARLRLAIGRRRGGLDGTLKFGDLLLHPASFTA
SLDGRELNLTLTEFKLLNFLVQHAGQAFTRTRLMQQAWGYEGNGRARTVDVHIRRLRAKLGTRHQSLVGTVRGVGYRAPT
PPQPEWIVGHQKP
>Mature_252_residues
SDISRRGAYGPGEARTSRGLEMSLDVVVLTNEDDFESALPDLSRFARPARRAALSTDGDGQFGPADVAIIDARSNVAAAQ
AVSHRLTADHPATAVVALVAPADCAAVDVDCNFDDVMLPGTCAEELQARLRLAIGRRRGGLDGTLKFGDLLLHPASFTAS
LDGRELNLTLTEFKLLNFLVQHAGQAFTRTRLMQQAWGYEGNGRARTVDVHIRRLRAKLGTRHQSLVGTVRGVGYRAPTP
PQPEWIVGHQKP

Specific function: Activates the transcription of the glnA gene [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786599, Length=129, Percent_Identity=37.2093023255814, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI87082012, Length=128, Percent_Identity=35.15625, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786784, Length=131, Percent_Identity=31.2977099236641, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367329, Length=94, Percent_Identity=42.5531914893617, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789402, Length=122, Percent_Identity=31.1475409836066, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790860, Length=176, Percent_Identity=29.5454545454545, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790552, Length=127, Percent_Identity=32.2834645669291, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27330; Mature: 27199

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDISRRGAYGPGEARTSRGLEMSLDVVVLTNEDDFESALPDLSRFARPARRAALSTDGD
CCCCCCCCCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
GQFGPADVAIIDARSNVAAAQAVSHRLTADHPATAVVALVAPADCAAVDVDCNFDDVMLP
CCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCCEECC
GTCAEELQARLRLAIGRRRGGLDGTLKFGDLLLHPASFTASLDGRELNLTLTEFKLLNFL
CCCHHHHHHHHHHHHHHCCCCCCCEEEHHHEEECCCCCEEECCCCEEEEEHHHHHHHHHH
VQHAGQAFTRTRLMQQAWGYEGNGRARTVDVHIRRLRAKLGTRHQSLVGTVRGVGYRAPT
HHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
PPQPEWIVGHQKP
CCCCCEECCCCCC
>Mature Secondary Structure 
SDISRRGAYGPGEARTSRGLEMSLDVVVLTNEDDFESALPDLSRFARPARRAALSTDGD
CCCCCCCCCCCCHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCC
GQFGPADVAIIDARSNVAAAQAVSHRLTADHPATAVVALVAPADCAAVDVDCNFDDVMLP
CCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEECCCCCCEECC
GTCAEELQARLRLAIGRRRGGLDGTLKFGDLLLHPASFTASLDGRELNLTLTEFKLLNFL
CCCHHHHHHHHHHHHHHCCCCCCCEEEHHHEEECCCCCEEECCCCEEEEEHHHHHHHHHH
VQHAGQAFTRTRLMQQAWGYEGNGRARTVDVHIRRLRAKLGTRHQSLVGTVRGVGYRAPT
HHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
PPQPEWIVGHQKP
CCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7688332; 12000953 [H]