| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is yhdF [H]
Identifier: 41409049
GI number: 41409049
Start: 3285368
End: 3286207
Strand: Direct
Name: yhdF [H]
Synonym: MAP2951
Alternate gene names: 41409049
Gene position: 3285368-3286207 (Clockwise)
Preceding gene: 41409046
Following gene: 41409051
Centisome position: 68.02
GC content: 67.62
Gene sequence:
>840_bases ATGGGCTTTGTGGCGCAACAACAATCCGTCCCGGGCGTGCAGGCGAAGATGGAACCAATTCCGGACTGTGGTGAAAACAG TTACCGGGGTTCGGGAAAACTGCTCGGCAAAAAGGCGATCATCACCGGCGGCGACAGCGGCATCGGCAGGGCGGTGGCGA TCGCCTACGCCCGCGAGGGCGCCGACGTGCTGATCGCCTACCTCAACGAGGACGACGACGCGCGCGACGTGGCCCGCCAC GTCACCGACGCCGGCCGCAAATGCGTGCTGGTGCCCGGCGACCTATCCGATCCCGCCCACTGCCGGGCGGTGGTGGACCG CGCGGTGCGGGAGCTGGGCGGGGTGGACATCCTGGTCAACAACGCCGCCTATCAAATGATGCACAAGAACCTCGACGAGA TCAGCGACGAGGAGTGGGACTACACCTTCCGGCTCAACGTCGGCGCTTATTTCTACCTGACCAAGGCCGCGCTGCCGCAT CTGCGCGCCGGCTCGTCGATCATCGGCAGCTCCTCGGTGAACTCCGATACGCCCAATCCCACCCTGGCGCCCTACGCGGC CACCAAGGCGGCCATCGCCAACTTCTCGGCCAGCCTGGCCCAGCTGCTGGGAGACAAGGGAATTCGGGTCAACAGCGTGG CGCCGGGGCCGATCTGGACACCGCTGATCCCGTCCACCATGCCGCCGGACAGCGTGGAGTCGTTCGGCGACAACGTGCCG CTGGGCCGCGCCGGGCAGCCGGCCGAACTGGCGCCCATCTACGTGCTGCTGGCCTCCGACGAGGCGAGCTACATCTCCGG GGCGCGGGTCGCCGTCACCGGCGGACGGCCCATCCTCTAG
Upstream 100 bases:
>100_bases CGGACGTGCCGACCGCCGGCCCCAGCCGGCGCGAATCCTGAAGCGGCACATGGCCGCCGAGGCAATGGACGACGAATTTT CGAGCAGCTGAGGAAATCCG
Downstream 100 bases:
>100_bases CGCCAAAGGCATTGGGCCGCTTGAAGTTGCCCACCGGCCGGGCGGCTAAACCGGTGAAAACACCGGAGCCGCCGCTGGTT TGGCGTGCGGTCAGCGGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MGFVAQQQSVPGVQAKMEPIPDCGENSYRGSGKLLGKKAIITGGDSGIGRAVAIAYAREGADVLIAYLNEDDDARDVARH VTDAGRKCVLVPGDLSDPAHCRAVVDRAVRELGGVDILVNNAAYQMMHKNLDEISDEEWDYTFRLNVGAYFYLTKAALPH LRAGSSIIGSSSVNSDTPNPTLAPYAATKAAIANFSASLAQLLGDKGIRVNSVAPGPIWTPLIPSTMPPDSVESFGDNVP LGRAGQPAELAPIYVLLASDEASYISGARVAVTGGRPIL
Sequences:
>Translated_279_residues MGFVAQQQSVPGVQAKMEPIPDCGENSYRGSGKLLGKKAIITGGDSGIGRAVAIAYAREGADVLIAYLNEDDDARDVARH VTDAGRKCVLVPGDLSDPAHCRAVVDRAVRELGGVDILVNNAAYQMMHKNLDEISDEEWDYTFRLNVGAYFYLTKAALPH LRAGSSIIGSSSVNSDTPNPTLAPYAATKAAIANFSASLAQLLGDKGIRVNSVAPGPIWTPLIPSTMPPDSVESFGDNVP LGRAGQPAELAPIYVLLASDEASYISGARVAVTGGRPIL >Mature_278_residues GFVAQQQSVPGVQAKMEPIPDCGENSYRGSGKLLGKKAIITGGDSGIGRAVAIAYAREGADVLIAYLNEDDDARDVARHV TDAGRKCVLVPGDLSDPAHCRAVVDRAVRELGGVDILVNNAAYQMMHKNLDEISDEEWDYTFRLNVGAYFYLTKAALPHL RAGSSIIGSSSVNSDTPNPTLAPYAATKAAIANFSASLAQLLGDKGIRVNSVAPGPIWTPLIPSTMPPDSVESFGDNVPL GRAGQPAELAPIYVLLASDEASYISGARVAVTGGRPIL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=33.8645418326693, Blast_Score=124, Evalue=7e-29, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=31.2252964426877, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=32.5991189427313, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=31.1284046692607, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI5031737, Length=277, Percent_Identity=31.4079422382672, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=29.9212598425197, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI19923817, Length=271, Percent_Identity=28.7822878228782, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=31.7647058823529, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=32.258064516129, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=28.4552845528455, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI4504505, Length=235, Percent_Identity=28.0851063829787, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4503301, Length=226, Percent_Identity=28.7610619469027, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=29.3877551020408, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=32.8205128205128, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=37.962962962963, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI310128830, Length=192, Percent_Identity=31.25, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI310115468, Length=192, Percent_Identity=31.25, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI40807363, Length=212, Percent_Identity=31.1320754716981, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI32455239, Length=172, Percent_Identity=29.0697674418605, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI5031765, Length=172, Percent_Identity=29.0697674418605, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=28.6486486486486, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI7706318, Length=205, Percent_Identity=26.3414634146341, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI40254986, Length=138, Percent_Identity=29.7101449275362, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=27.9527559055118, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI209862901, Length=205, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI19923983, Length=205, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=4e-12, Organism=Escherichia coli, GI1789378, Length=276, Percent_Identity=52.536231884058, Blast_Score=286, Evalue=1e-78, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=35.4330708661417, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=38.1147540983607, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=32.7868852459016, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=33.1983805668016, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1787905, Length=251, Percent_Identity=32.6693227091633, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=32.3886639676113, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=33.8775510204082, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=27.7551020408163, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=30.7086614173228, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=30.0813008130081, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787526, Length=259, Percent_Identity=29.3436293436293, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786701, Length=226, Percent_Identity=30.5309734513274, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=33.7349397590361, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=31.7269076305221, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=32.3886639676113, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=31.9391634980989, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=33.7164750957854, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=30.3030303030303, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=30.6818181818182, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=32.156862745098, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=30.4182509505703, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=29.2, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=31.1787072243346, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=30.9160305343511, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=30.4182509505703, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=30.5970149253731, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=30.6818181818182, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17531453, Length=278, Percent_Identity=31.6546762589928, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17536025, Length=266, Percent_Identity=29.3233082706767, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=28.6259541984733, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=30.6818181818182, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=30.3030303030303, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=32.5581395348837, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=29.6875, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=28.4090909090909, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=28.4090909090909, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=30.1960784313725, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=32.0855614973262, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538486, Length=273, Percent_Identity=27.4725274725275, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71982365, Length=197, Percent_Identity=26.3959390862944, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=27.1604938271605, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=27.710843373494, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17568967, Length=210, Percent_Identity=28.0952380952381, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193203117, Length=227, Percent_Identity=28.1938325991189, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=27.1653543307087, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203115, Length=224, Percent_Identity=28.125, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=28.8557213930348, Blast_Score=69, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=28, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=247, Percent_Identity=24.6963562753036, Blast_Score=66, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=217, Percent_Identity=25.8064516129032, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32.8, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=31.2, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=32.3886639676113, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=32.3886639676113, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=31.7073170731707, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=31.7269076305221, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=30.5882352941176, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI24644337, Length=217, Percent_Identity=33.1797235023041, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI21357673, Length=215, Percent_Identity=28.8372093023256, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=26.171875, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21355631, Length=168, Percent_Identity=31.547619047619, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24584748, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI161076933, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI28574402, Length=202, Percent_Identity=29.2079207920792, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24584744, Length=202, Percent_Identity=29.2079207920792, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24640492, Length=193, Percent_Identity=27.4611398963731, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=30.6532663316583, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364892, Length=170, Percent_Identity=31.1764705882353, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI221331218, Length=212, Percent_Identity=26.8867924528302, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24665243, Length=197, Percent_Identity=27.4111675126904, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24581726, Length=224, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29304; Mature: 29173
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFVAQQQSVPGVQAKMEPIPDCGENSYRGSGKLLGKKAIITGGDSGIGRAVAIAYAREG CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCEEEEECCCCCCCCEEEEEEECCC ADVLIAYLNEDDDARDVARHVTDAGRKCVLVPGDLSDPAHCRAVVDRAVRELGGVDILVN CEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEC NAAYQMMHKNLDEISDEEWDYTFRLNVGAYFYLTKAALPHLRAGSSIIGSSSVNSDTPNP HHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCC TLAPYAATKAAIANFSASLAQLLGDKGIRVNSVAPGPIWTPLIPSTMPPDSVESFGDNVP CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCC LGRAGQPAELAPIYVLLASDEASYISGARVAVTGGRPIL CCCCCCCCCCCEEEEEEECCCCHHHCCCEEEEECCCCCC >Mature Secondary Structure GFVAQQQSVPGVQAKMEPIPDCGENSYRGSGKLLGKKAIITGGDSGIGRAVAIAYAREG CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCEEEEECCCCCCCCEEEEEEECCC ADVLIAYLNEDDDARDVARHVTDAGRKCVLVPGDLSDPAHCRAVVDRAVRELGGVDILVN CEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEC NAAYQMMHKNLDEISDEEWDYTFRLNVGAYFYLTKAALPHLRAGSSIIGSSSVNSDTPNP HHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCC TLAPYAATKAAIANFSASLAQLLGDKGIRVNSVAPGPIWTPLIPSTMPPDSVESFGDNVP CCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCC LGRAGQPAELAPIYVLLASDEASYISGARVAVTGGRPIL CCCCCCCCCCCEEEEEEECCCCHHHCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]