Click here to switch to the map view.

The map label for this gene is nrnA [H]

Identifier: 41409003

GI number: 41409003

Start: 3235575

End: 3236570

Strand: Reverse

Name: nrnA [H]

Synonym: MAP2905c

Alternate gene names: 41409003

Gene position: 3236570-3235575 (Counterclockwise)

Preceding gene: 41409004

Following gene: 41409001

Centisome position: 67.01

GC content: 70.58

Gene sequence:

>996_bases
GTGACGACGACCAACCCGAATACTGAGCTGACCGGCGTCCGCGTGGATGCGCACGGCGCCGTCGAGTTGCTGTCGCGGGC
GGGCACCGTCGCGGTGATCGCGCACGTGCATCCCGACGCCGACACCATCGGGGCGGGGCTGGCCCTGGGGCTGGTGCTGG
ACAAGTGCGGTAAGCGGGTCGAGGTGAGTTTCGCCGAGCCGGCCGGGCTGCCCGAGTCGCTGGCGTCGCTGCCCGGCTGC
CGGTTGCTGGTCAGGCCGGACGAGATCCGGCGCGACGCGGATTTGGTTGTCACCGTGGATGTTCCGAGCGTCAAGCGGCT
GGGCGTGTTGAGTGAGTTGGCGGTCACCGGCCGCGAGGTGCTGGTCATCGACCACCACGCCTCCAACGACGTGTTCGGCA
CCGCCAATTTCATTGACGTGGCGGCTGATTCGACGACGATGATGATCGCCGACATCCTGGACGCCTGGGGCAAGCCCATC
GACCCCGACGTCGCGCACTGCATCTACGCGGGCCTGACCACCGACACCGGCTCGTTCCGGTGGGCCAGCGCCCGGGCGCT
GCGGCTGGCCGCCCGGCTGGTCGACATCGGCGTGGACAACGCCGGGATCAGCCGGGCCCTGATGGATACTCATCCGTTCG
GATGGCTGCCGCTGCTGTCGCGCGTGCTGGCCTCCGCGCAGCTGCTGCCGGACGCGGTCGGGGGCCGCGGCCTGGTGTAT
GCCGTTGTCGGCAACCAGGATTGGATCAGCTCACGCCCGGAAGAAGTCGAGAGCATCGTCGACATCGTGCGCACCACGCA
GCAGGCCGAGGTGGCCGCGGTGTTCAAGGAGATCGCGCCGGGGCAGTGGTCGGTGTCGATGCGGGCCAAGGCGCAGGTCG
ACCTGGCGGCGGTGGCCTCCGGGTTCGGCGGCGGCGGGCACCGGCTGGCGGCCGGCTACTCGACCACCGGCTCGATCGAG
GACGCGGTGGCCTCGCTGCGCGCCGCCCTGGGGTAG

Upstream 100 bases:

>100_bases
GATCTGGCGCGGGTTCGGTCCGGCGCCAAGCCGGCTGGGGAGGCCGATCCATACCGGGAGAGCGGATCGGGCGTCGAGCC
CGGCCGGGACGGGAGCATCG

Downstream 100 bases:

>100_bases
CACGGCTTTCCAGGTTCTCAGAACGCCCAGCTGCCCGAGCGCTGCAGGACGAACCCGTGGTCGCCGCTGGTGGTGTCCAG
GCAGGCGATGAGGTGGTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: 3'(2'),5'-bisphosphate nucleotidase; 3'-phosphoadenosine 5'-phosphate phosphatase; PAP phosphatase; nanoRNAse [H]

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MTTTNPNTELTGVRVDAHGAVELLSRAGTVAVIAHVHPDADTIGAGLALGLVLDKCGKRVEVSFAEPAGLPESLASLPGC
RLLVRPDEIRRDADLVVTVDVPSVKRLGVLSELAVTGREVLVIDHHASNDVFGTANFIDVAADSTTMMIADILDAWGKPI
DPDVAHCIYAGLTTDTGSFRWASARALRLAARLVDIGVDNAGISRALMDTHPFGWLPLLSRVLASAQLLPDAVGGRGLVY
AVVGNQDWISSRPEEVESIVDIVRTTQQAEVAAVFKEIAPGQWSVSMRAKAQVDLAAVASGFGGGGHRLAAGYSTTGSIE
DAVASLRAALG

Sequences:

>Translated_331_residues
MTTTNPNTELTGVRVDAHGAVELLSRAGTVAVIAHVHPDADTIGAGLALGLVLDKCGKRVEVSFAEPAGLPESLASLPGC
RLLVRPDEIRRDADLVVTVDVPSVKRLGVLSELAVTGREVLVIDHHASNDVFGTANFIDVAADSTTMMIADILDAWGKPI
DPDVAHCIYAGLTTDTGSFRWASARALRLAARLVDIGVDNAGISRALMDTHPFGWLPLLSRVLASAQLLPDAVGGRGLVY
AVVGNQDWISSRPEEVESIVDIVRTTQQAEVAAVFKEIAPGQWSVSMRAKAQVDLAAVASGFGGGGHRLAAGYSTTGSIE
DAVASLRAALG
>Mature_330_residues
TTTNPNTELTGVRVDAHGAVELLSRAGTVAVIAHVHPDADTIGAGLALGLVLDKCGKRVEVSFAEPAGLPESLASLPGCR
LLVRPDEIRRDADLVVTVDVPSVKRLGVLSELAVTGREVLVIDHHASNDVFGTANFIDVAADSTTMMIADILDAWGKPID
PDVAHCIYAGLTTDTGSFRWASARALRLAARLVDIGVDNAGISRALMDTHPFGWLPLLSRVLASAQLLPDAVGGRGLVYA
VVGNQDWISSRPEEVESIVDIVRTTQQAEVAAVFKEIAPGQWSVSMRAKAQVDLAAVASGFGGGGHRLAAGYSTTGSIED
AVASLRAALG

Specific function: Bifunctional enzyme which has both oligoribonuclease and pAp-phosphatase activities. Degrades RNA oligonucleotides with a length of 5 nucleotides and shorter. Converts 3'(2')- phosphoadenosine 5'-phosphate (PAP) to AMP [H]

COG id: COG0618

COG function: function code R; Exopolyphosphatase-related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: =3.1.3.7 [H]

Molecular weight: Translated: 34551; Mature: 34419

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTNPNTELTGVRVDAHGAVELLSRAGTVAVIAHVHPDADTIGAGLALGLVLDKCGKRV
CCCCCCCCEEEEEEECCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEE
EVSFAEPAGLPESLASLPGCRLLVRPDEIRRDADLVVTVDVPSVKRLGVLSELAVTGREV
EEEECCCCCCHHHHHCCCCCEEEECCHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
LVIDHHASNDVFGTANFIDVAADSTTMMIADILDAWGKPIDPDVAHCIYAGLTTDTGSFR
EEEEECCCCCCEECCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEE
WASARALRLAARLVDIGVDNAGISRALMDTHPFGWLPLLSRVLASAQLLPDAVGGRGLVY
EHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCEEEE
AVVGNQDWISSRPEEVESIVDIVRTTQQAEVAAVFKEIAPGQWSVSMRAKAQVDLAAVAS
EEECCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHC
GFGGGGHRLAAGYSTTGSIEDAVASLRAALG
CCCCCCCEEEECCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TTTNPNTELTGVRVDAHGAVELLSRAGTVAVIAHVHPDADTIGAGLALGLVLDKCGKRV
CCCCCCCEEEEEEECCCHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEE
EVSFAEPAGLPESLASLPGCRLLVRPDEIRRDADLVVTVDVPSVKRLGVLSELAVTGREV
EEEECCCCCCHHHHHCCCCCEEEECCHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
LVIDHHASNDVFGTANFIDVAADSTTMMIADILDAWGKPIDPDVAHCIYAGLTTDTGSFR
EEEEECCCCCCEECCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEE
WASARALRLAARLVDIGVDNAGISRALMDTHPFGWLPLLSRVLASAQLLPDAVGGRGLVY
EHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCEEEE
AVVGNQDWISSRPEEVESIVDIVRTTQQAEVAAVFKEIAPGQWSVSMRAKAQVDLAAVAS
EEECCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHC
GFGGGGHRLAAGYSTTGSIEDAVASLRAALG
CCCCCCCEEEECCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]