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The map label for this gene is rbfA

Identifier: 41409004

GI number: 41409004

Start: 3236545

End: 3237033

Strand: Reverse

Name: rbfA

Synonym: MAP2906c

Alternate gene names: 41409004

Gene position: 3237033-3236545 (Counterclockwise)

Preceding gene: 41409005

Following gene: 41409003

Centisome position: 67.02

GC content: 70.96

Gene sequence:

>489_bases
ATGCCTGACCCGGCGCGGGCCCGCCGTCTGGCCAAGCGGATCAACACGATCGTCGCCTCGGCGATCGAGTTCGAGATCAA
GGATCCCGGACTGGACGGCGTCACCATCGTCGACACGAAGGTGACCGCCGACCTGCACGACGCCACGGTGTTCTACACGG
TGATGGGACGCACGCTGGACGACGAGCCGGACTACGGCGCCGCCGCGGCCGCGCTGGAGCGGGCCAAGGGCGCGCTGCGC
ACCATGGTCGGAGCCGGCACCGGCGTGCGTTTCACCCCCACCCTCACGTTCACCCGCGACACCACGTCCGACAGCGTGGC
GCGGATGGACGAATTGCTGGCCCGGGCCCGCGCCGCCGACGCTGATCTGGCGCGGGTTCGGTCCGGCGCCAAGCCGGCTG
GGGAGGCCGATCCATACCGGGAGAGCGGATCGGGCGTCGAGCCCGGCCGGGACGGGAGCATCGGTGACGACGACCAACCC
GAATACTGA

Upstream 100 bases:

>100_bases
AAGGCGACGTCATCGAGTCCTACGAGCTGGTCCAAAAAGAGCGCACCTAAGCGGTAGCGCCCAGGGAAGCGAAGTGATGA
GGAGGAGGCGGTGAATCCGA

Downstream 100 bases:

>100_bases
GCTGACCGGCGTCCGCGTGGATGCGCACGGCGCCGTCGAGTTGCTGTCGCGGGCGGGCACCGTCGCGGTGATCGCGCACG
TGCATCCCGACGCCGACACC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MPDPARARRLAKRINTIVASAIEFEIKDPGLDGVTIVDTKVTADLHDATVFYTVMGRTLDDEPDYGAAAAALERAKGALR
TMVGAGTGVRFTPTLTFTRDTTSDSVARMDELLARARAADADLARVRSGAKPAGEADPYRESGSGVEPGRDGSIGDDDQP
EY

Sequences:

>Translated_162_residues
MPDPARARRLAKRINTIVASAIEFEIKDPGLDGVTIVDTKVTADLHDATVFYTVMGRTLDDEPDYGAAAAALERAKGALR
TMVGAGTGVRFTPTLTFTRDTTSDSVARMDELLARARAADADLARVRSGAKPAGEADPYRESGSGVEPGRDGSIGDDDQP
EY
>Mature_161_residues
PDPARARRLAKRINTIVASAIEFEIKDPGLDGVTIVDTKVTADLHDATVFYTVMGRTLDDEPDYGAAAAALERAKGALRT
MVGAGTGVRFTPTLTFTRDTTSDSVARMDELLARARAADADLARVRSGAKPAGEADPYRESGSGVEPGRDGSIGDDDQPE
Y

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_MYCA1 (A0QIY1)

Other databases:

- EMBL:   CP000479
- RefSeq:   YP_882869.1
- ProteinModelPortal:   A0QIY1
- SMR:   A0QIY1
- STRING:   A0QIY1
- EnsemblBacteria:   EBMYCT00000013902
- GeneID:   4530408
- GenomeReviews:   CP000479_GR
- KEGG:   mav:MAV_3692
- TIGR:   MAV_3692
- eggNOG:   COG0858
- GeneTree:   EBGT00050000017622
- HOGENOM:   HBG751055
- OMA:   TGDLHDA
- ProtClustDB:   PRK00521
- BioCyc:   MAVI243243:MAV_3692-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 17186; Mature: 17055

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDPARARRLAKRINTIVASAIEFEIKDPGLDGVTIVDTKVTADLHDATVFYTVMGRTLD
CCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEECEEECCCCHHEEEEEECCCCCC
DEPDYGAAAAALERAKGALRTMVGAGTGVRFTPTLTFTRDTTSDSVARMDELLARARAAD
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC
ADLARVRSGAKPAGEADPYRESGSGVEPGRDGSIGDDDQPEY
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PDPARARRLAKRINTIVASAIEFEIKDPGLDGVTIVDTKVTADLHDATVFYTVMGRTLD
CCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEECEEECCCCHHEEEEEECCCCCC
DEPDYGAAAAALERAKGALRTMVGAGTGVRFTPTLTFTRDTTSDSVARMDELLARARAAD
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC
ADLARVRSGAKPAGEADPYRESGSGVEPGRDGSIGDDDQPEY
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA