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The map label for this gene is dapF

Identifier: 41408938

GI number: 41408938

Start: 3169420

End: 3170304

Strand: Reverse

Name: dapF

Synonym: MAP2840c

Alternate gene names: 41408938

Gene position: 3170304-3169420 (Counterclockwise)

Preceding gene: 41408939

Following gene: 41408937

Centisome position: 65.64

GC content: 75.37

Gene sequence:

>885_bases
GTGAAATTCGCGAAGGGCCACGGCACCGAGAACGACTTCGTGCTGCTGTGCGACCCCCCGGCCGAGCTGCGCCTGACCGG
GGCGGGCGTGGCCGCGCTGTGCGACCGGCGGCGCGGGCTGGGCGCCGACGGGGTGCTGCGGGTCACCGCCGCCGCCGCCG
CCGCCGCGGCCGGCGTGCTGGACCGGCTGCCCGACGGCGTGGCCGGCGACGACTGGTACATGGACTACCGCAACGCGGAC
GGCTCGGTGGCCCAGATGTGCGGCAACGGCGTGCGGGTCTTCGCGCACTATCTGCGCGCCAGCGGGCTGGAGACCCGCGA
CGAATTCGTGGTCGGGTCGCTGGCCGGCCCCCGGCCGGTCACCGTGCACGCCGCCGACGCGACCGGCGCCGACGTCAGCG
TCGACATGGGCAAGGCCAACACGCTGGGCGGCGGGGGCGAGGCCTTCGAGGCGACAGTGGGGGGCCGGCGGTTCGCCGGC
CTGGCGGTCGACGTGGGCAACCCCCACCTGGCCTGCCTGGACCCCGAGCTGAGCGTCGACGAGCTGGCCGCGCTGGACGT
CGCCGCGCCGGTGAGCTTCGATGCCGCCCAGTTCCCGGACGGGGTCAACATCGAGGTCCTCACCGCACCGGCGGCCGGGG
TGGTGCACATGCGGGTGCACGAGCGCGGCGTGGGCGAGACGCGCTCCTGCGGCACCGGAACCGTCGCGGCCGTCGTCGCC
GCGCTGGCCGCCGCCGGCGCCGACACCGGCACCCTGACCGTGCGGGTACCGGGCGGCGACGTCGTGGTCACCGTCACCGA
CGCCACCAGTTACCTGCGCGGGCCGTCGGTGCTGGTGGCCCACGGCGAAATCAGCGAGGAATGGTGGCAGCAAGCGCAGC
GTTAA

Upstream 100 bases:

>100_bases
CGGCGCGACCACCGGGTGCGCTGGCTCGACGCCGGCGCCTGCAGCCCGCCCCGCCTCGCCGACGCCGCCCTGGAGGCCTG
GCGCCACGTATCCTGAGCAG

Downstream 100 bases:

>100_bases
TTCAGGTGCACGCCACCGAGGTTGCGTGCATCATCTTTTATTGCCTATGACACATCCCGAATTCCGCGACGACGCTCCGG
CCATCACGGAGCCGAGCACC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVLDRLPDGVAGDDWYMDYRNAD
GSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADATGADVSVDMGKANTLGGGGEAFEATVGGRRFAG
LAVDVGNPHLACLDPELSVDELAALDVAAPVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAAVVA
ALAAAGADTGTLTVRVPGGDVVVTVTDATSYLRGPSVLVAHGEISEEWWQQAQR

Sequences:

>Translated_294_residues
MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVLDRLPDGVAGDDWYMDYRNAD
GSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADATGADVSVDMGKANTLGGGGEAFEATVGGRRFAG
LAVDVGNPHLACLDPELSVDELAALDVAAPVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAAVVA
ALAAAGADTGTLTVRVPGGDVVVTVTDATSYLRGPSVLVAHGEISEEWWQQAQR
>Mature_294_residues
MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVLDRLPDGVAGDDWYMDYRNAD
GSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPVTVHAADATGADVSVDMGKANTLGGGGEAFEATVGGRRFAG
LAVDVGNPHLACLDPELSVDELAALDVAAPVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAAVVA
ALAAAGADTGTLTVRVPGGDVVVTVTDATSYLRGPSVLVAHGEISEEWWQQAQR

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=297, Percent_Identity=29.96632996633, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 29958; Mature: 29958

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVL
CCCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHH
DRLPDGVAGDDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV
HHCCCCCCCCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHEEEECCCCCCEE
TVHAADATGADVSVDMGKANTLGGGGEAFEATVGGRRFAGLAVDVGNPHLACLDPELSVD
EEEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEEEEECCCCCHH
ELAALDVAAPVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAAVVA
HHHHHHCCCCCCCCHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
ALAAAGADTGTLTVRVPGGDVVVTVTDATSYLRGPSVLVAHGEISEEWWQQAQR
HHHHCCCCCCEEEEEECCCCEEEEEECCHHHHCCCEEEEEECCCCHHHHHHHCC
>Mature Secondary Structure
MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVL
CCCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHH
DRLPDGVAGDDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLETRDEFVVGSLAGPRPV
HHCCCCCCCCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHEEEECCCCCCEE
TVHAADATGADVSVDMGKANTLGGGGEAFEATVGGRRFAGLAVDVGNPHLACLDPELSVD
EEEECCCCCCEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCEEEEECCCCCHH
ELAALDVAAPVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAAVVA
HHHHHHCCCCCCCCHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
ALAAAGADTGTLTVRVPGGDVVVTVTDATSYLRGPSVLVAHGEISEEWWQQAQR
HHHHCCCCCCEEEEEECCCCEEEEEECCHHHHCCCEEEEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA