Definition Mycobacterium avium subsp. paratuberculosis K-10, complete genome.
Accession NC_002944
Length 4,829,781

Click here to switch to the map view.

The map label for this gene is csp1 [H]

Identifier: 41408935

GI number: 41408935

Start: 3164231

End: 3166591

Strand: Reverse

Name: csp1 [H]

Synonym: MAP2837c

Alternate gene names: 41408935

Gene position: 3166591-3164231 (Counterclockwise)

Preceding gene: 41408936

Following gene: 41408933

Centisome position: 65.56

GC content: 72.22

Gene sequence:

>2361_bases
CTGGAGCAAAGTAATGCGAGCCCGGCGACAAGGCGGATCGTGAGTGGGTCCTTTCCCCGCGCCATCGCGGCCCGCTCGCC
GGAGACGCAGTACGGGCGTCGCCGCAAAGGGAGCCATGCCCGTCGGCTGGAAGGCTTGGTGAAGGTGCACAGAGGTCGGA
TGCGCAAGCTGGTCGGAAGCGCGCTGGTCAGCTTGACGACCACAGCACTGGCCGCGGTACTCCTGGCGCCCGCCGCGACG
GCGAGCCCGATCGGCGATGCCGAGGCGGCGATCATGGCGGCCTGGGAGAAGGCCGGCGGCGACACCTCCCCGCTGGGCGC
CCGCAAGGGCGACGTGTATCCCGTCGGGGACGGGTTCGCGCTGGACTTCGACGGCGGCAAGATGTTCTTCACCCCGGCCA
CCGGCGCGAAATTCGCCTACGGGCCGATCCTGGACAAATACGAGTCGCTGGGTGGGCCGGCCGGCAGCGACCTGGGCTTC
CCGGCCATCAACGAGGTGCCGGGCCTGGCCGGTCCCGACAGCCGGGTGGTCACCTTCTCGGCCAGCGACAAGCCGGTGAT
CTTCTGGACGCCCGAGCACGGCGCCTACGTGGTGCGCGGCGCCATCAACTCGGCCTGGGACAAGCTCGGCAGCTCGGGCG
GGGTGCTCGGGGTGCCGGTCGGTGACGAGACCTACAACGGCGAGGTGTCCACCCAGAAATTCAGCGGCGGCCAGGTGTCC
TGGAACCGGCAGACCAAGCAGTTCAGCACCGAACCGCCGGGGTTGGCCGACCAGTTGAAGGGCCTGCAGGTCGCCATCGA
TCCCACCGCCGCCATCAACACGGCCTGGCGCGCGGCCGGCGGGCCCGGCGGCCCGCTGGGTGCCAAGCAGGGCGGACCCA
CCCCGGTCGGCGGCGACGGGATCGTGCAGAACTTCGCCGGCGGCAAGGTGTTCTTCACCCCGGCCACCGGGGCGAACGCG
CTGGAGAGCGACATCCTGGCCAAATACGAGTCGCTGGGCGGGCCGGCCGGCAGCGACCTGGGATTCCCCACCACCAACGA
GACCGACGGCGGCATCGGGCCGTCCAGCCGGATCGCCACCTTCTCGGCCCCCGACAAGCCGGTGATCTTCTGGACGGCCG
ACCACGGCGCCTTCGTGGTGCGCGGCGCGATGCGGGCCGCCTGGGACAAACTCCGCGCTCCGGCCGGCAAACTGGGCGCG
CCGGTCGGCGACCAGGCCGTGGACGGCGACGTGATCTCCCAGCAGTTCACCGGCGGCAAGATCTCCTGGAACCGGGCCAA
GAACGCGTTCAGCACCGACCCGTCGAACCTGGCGCCGCTGCTGTCCGGCCTGCAGATCTCGGGCCAGAACCAGCCGAGCA
GTTCGGCCATGCCGGCCCACCCCAAGAAGTTCAGCTGGCATTGGTGGTGGCTGATGGCCGCGGTCCCGGTCGCGGTCCTG
CTGGTGCTGCTGATCTGGGTGCTGTTCGTCTGGCGCCGCCGCCGGCCCGGGCCCGAGGCCACCGGCTACGGCGTCGACCA
CGGCTACGACGCGGCCGAGGGGCAGTGGGGACACGACGACGCCGACGTGGCCACCGAGCACTTCGGCGCGCCGCCGTCCG
GTGAGCCGCCGGCCGGGTCCGGGGCCGCCGCCCGGGTCAGTTGGCAGCGCCAGGCCCCCGCCGACGGCGGGTACGGGTTC
GAGGAGGAGGACCCCGACGCGGTCGACACCGATTCGATCCCGGTGGTCTCCGACGAGATGCTCGCCGAAGCCGACTATCC
CGCCGCCGAGGCCGACTACACCGACTACACCGACGCCGTCCCGGAGGTCGCCGAACCCGAGACCGCCGACGACGCCGCCT
ACGCCGACGCCGACTACGCCGAGGTCGACTACCCGGATGTCGGCTACCGGGAGGACGAGTATCCCGACCTCGCCGTGCCG
CACACCCCGCCCGACGCCGACGCCGTGACCGGCGGCATCCCGGCCGCCGAGGCCGACGACGAATACGCCGAGCTGGCTGC
GCCGCAAGCGCAGCCCGAAGAGCGCCCGGAACCGCAGCCCGGACCGGAGGAGGTGGCGGAGGCCGCCGGCGGTGCCGTCG
CCGCCGGTGTTGCCGGGACCCGACCGCGGTCCGGGCGGCACGCCGCCGCGGACGAGGAGGACGCCTCGGAGAACGGTCTG
GCCGGCCCGGACGGGCGGCCGACAATCCACCTGCCGCTGGAGGACCCCTACCAGGCGCCGGAGGGTTACCCGATCAAGGC
CAGCGCTCGCTACGGCCTGTACTACACGCCGGGCAGCGACCTGTACCGGGACACGCTGCCCGAGCTGTGGCTGTCCAGCG
AAGAGGTCGCGCAGGCCAACGGTTTCACCAAGGCCGACTGA

Upstream 100 bases:

>100_bases
CACGCCGGGTCGCGATTCGGACATGGCTCCGCATCGGTTCGACATCGATGCGGTATCCGTTTTTGTAAAATTCGTAATTT
GACTTCGCATTTCTTGTTGG

Downstream 100 bases:

>100_bases
CCGGCGTCACACCTTGCGGATCACCGTGACCACCTTGCCCAGCACGGTCGCGTCGTTACCGGGAATGGGGTCGAACGCCG
GGTTGTGCGGCATCAGCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 786; Mature: 786

Protein sequence:

>786_residues
MEQSNASPATRRIVSGSFPRAIAARSPETQYGRRRKGSHARRLEGLVKVHRGRMRKLVGSALVSLTTTALAAVLLAPAAT
ASPIGDAEAAIMAAWEKAGGDTSPLGARKGDVYPVGDGFALDFDGGKMFFTPATGAKFAYGPILDKYESLGGPAGSDLGF
PAINEVPGLAGPDSRVVTFSASDKPVIFWTPEHGAYVVRGAINSAWDKLGSSGGVLGVPVGDETYNGEVSTQKFSGGQVS
WNRQTKQFSTEPPGLADQLKGLQVAIDPTAAINTAWRAAGGPGGPLGAKQGGPTPVGGDGIVQNFAGGKVFFTPATGANA
LESDILAKYESLGGPAGSDLGFPTTNETDGGIGPSSRIATFSAPDKPVIFWTADHGAFVVRGAMRAAWDKLRAPAGKLGA
PVGDQAVDGDVISQQFTGGKISWNRAKNAFSTDPSNLAPLLSGLQISGQNQPSSSAMPAHPKKFSWHWWWLMAAVPVAVL
LVLLIWVLFVWRRRRPGPEATGYGVDHGYDAAEGQWGHDDADVATEHFGAPPSGEPPAGSGAAARVSWQRQAPADGGYGF
EEEDPDAVDTDSIPVVSDEMLAEADYPAAEADYTDYTDAVPEVAEPETADDAAYADADYAEVDYPDVGYREDEYPDLAVP
HTPPDADAVTGGIPAAEADDEYAELAAPQAQPEERPEPQPGPEEVAEAAGGAVAAGVAGTRPRSGRHAAADEEDASENGL
AGPDGRPTIHLPLEDPYQAPEGYPIKASARYGLYYTPGSDLYRDTLPELWLSSEEVAQANGFTKAD

Sequences:

>Translated_786_residues
MEQSNASPATRRIVSGSFPRAIAARSPETQYGRRRKGSHARRLEGLVKVHRGRMRKLVGSALVSLTTTALAAVLLAPAAT
ASPIGDAEAAIMAAWEKAGGDTSPLGARKGDVYPVGDGFALDFDGGKMFFTPATGAKFAYGPILDKYESLGGPAGSDLGF
PAINEVPGLAGPDSRVVTFSASDKPVIFWTPEHGAYVVRGAINSAWDKLGSSGGVLGVPVGDETYNGEVSTQKFSGGQVS
WNRQTKQFSTEPPGLADQLKGLQVAIDPTAAINTAWRAAGGPGGPLGAKQGGPTPVGGDGIVQNFAGGKVFFTPATGANA
LESDILAKYESLGGPAGSDLGFPTTNETDGGIGPSSRIATFSAPDKPVIFWTADHGAFVVRGAMRAAWDKLRAPAGKLGA
PVGDQAVDGDVISQQFTGGKISWNRAKNAFSTDPSNLAPLLSGLQISGQNQPSSSAMPAHPKKFSWHWWWLMAAVPVAVL
LVLLIWVLFVWRRRRPGPEATGYGVDHGYDAAEGQWGHDDADVATEHFGAPPSGEPPAGSGAAARVSWQRQAPADGGYGF
EEEDPDAVDTDSIPVVSDEMLAEADYPAAEADYTDYTDAVPEVAEPETADDAAYADADYAEVDYPDVGYREDEYPDLAVP
HTPPDADAVTGGIPAAEADDEYAELAAPQAQPEERPEPQPGPEEVAEAAGGAVAAGVAGTRPRSGRHAAADEEDASENGL
AGPDGRPTIHLPLEDPYQAPEGYPIKASARYGLYYTPGSDLYRDTLPELWLSSEEVAQANGFTKAD
>Mature_786_residues
MEQSNASPATRRIVSGSFPRAIAARSPETQYGRRRKGSHARRLEGLVKVHRGRMRKLVGSALVSLTTTALAAVLLAPAAT
ASPIGDAEAAIMAAWEKAGGDTSPLGARKGDVYPVGDGFALDFDGGKMFFTPATGAKFAYGPILDKYESLGGPAGSDLGF
PAINEVPGLAGPDSRVVTFSASDKPVIFWTPEHGAYVVRGAINSAWDKLGSSGGVLGVPVGDETYNGEVSTQKFSGGQVS
WNRQTKQFSTEPPGLADQLKGLQVAIDPTAAINTAWRAAGGPGGPLGAKQGGPTPVGGDGIVQNFAGGKVFFTPATGANA
LESDILAKYESLGGPAGSDLGFPTTNETDGGIGPSSRIATFSAPDKPVIFWTADHGAFVVRGAMRAAWDKLRAPAGKLGA
PVGDQAVDGDVISQQFTGGKISWNRAKNAFSTDPSNLAPLLSGLQISGQNQPSSSAMPAHPKKFSWHWWWLMAAVPVAVL
LVLLIWVLFVWRRRRPGPEATGYGVDHGYDAAEGQWGHDDADVATEHFGAPPSGEPPAGSGAAARVSWQRQAPADGGYGF
EEEDPDAVDTDSIPVVSDEMLAEADYPAAEADYTDYTDAVPEVAEPETADDAAYADADYAEVDYPDVGYREDEYPDLAVP
HTPPDADAVTGGIPAAEADDEYAELAAPQAQPEERPEPQPGPEEVAEAAGGAVAAGVAGTRPRSGRHAAADEEDASENGL
AGPDGRPTIHLPLEDPYQAPEGYPIKASARYGLYYTPGSDLYRDTLPELWLSSEEVAQANGFTKAD

Specific function: One of the two major secreted proteins [H]

COG id: COG5479

COG function: function code M; Uncharacterized protein potentially involved in peptidoglycan biosynthesis

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000801
- InterPro:   IPR013207 [H]

Pfam domain/function: PF00756 Esterase; PF08310 LGFP [H]

EC number: NA

Molecular weight: Translated: 82018; Mature: 82018

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS00116 DNA_POLYMERASE_B

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQSNASPATRRIVSGSFPRAIAARSPETQYGRRRKGSHARRLEGLVKVHRGRMRKLVGS
CCCCCCCHHHHHHHCCCCCHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ALVSLTTTALAAVLLAPAATASPIGDAEAAIMAAWEKAGGDTSPLGARKGDVYPVGDGFA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEE
LDFDGGKMFFTPATGAKFAYGPILDKYESLGGPAGSDLGFPAINEVPGLAGPDSRVVTFS
EEECCCEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEEE
ASDKPVIFWTPEHGAYVVRGAINSAWDKLGSSGGVLGVPVGDETYNGEVSTQKFSGGQVS
CCCCEEEEECCCCCCEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCEE
WNRQTKQFSTEPPGLADQLKGLQVAIDPTAAINTAWRAAGGPGGPLGAKQGGPTPVGGDG
ECCCHHHCCCCCCCHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
IVQNFAGGKVFFTPATGANALESDILAKYESLGGPAGSDLGFPTTNETDGGIGPSSRIAT
HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE
FSAPDKPVIFWTADHGAFVVRGAMRAAWDKLRAPAGKLGAPVGDQAVDGDVISQQFTGGK
ECCCCCCEEEEECCCCCEEEHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHCCCCE
ISWNRAKNAFSTDPSNLAPLLSGLQISGQNQPSSSAMPAHPKKFSWHWWWLMAAVPVAVL
EEHHHCCCCCCCCHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LVLLIWVLFVWRRRRPGPEATGYGVDHGYDAAEGQWGHDDADVATEHFGAPPSGEPPAGS
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
GAAARVSWQRQAPADGGYGFEEEDPDAVDTDSIPVVSDEMLAEADYPAAEADYTDYTDAV
CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHCC
PEVAEPETADDAAYADADYAEVDYPDVGYREDEYPDLAVPHTPPDADAVTGGIPAAEADD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC
EYAELAAPQAQPEERPEPQPGPEEVAEAAGGAVAAGVAGTRPRSGRHAAADEEDASENGL
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
AGPDGRPTIHLPLEDPYQAPEGYPIKASARYGLYYTPGSDLYRDTLPELWLSSEEVAQAN
CCCCCCCEEECCCCCCCCCCCCCCEEECCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHC
GFTKAD
CCCCCC
>Mature Secondary Structure
MEQSNASPATRRIVSGSFPRAIAARSPETQYGRRRKGSHARRLEGLVKVHRGRMRKLVGS
CCCCCCCHHHHHHHCCCCCHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ALVSLTTTALAAVLLAPAATASPIGDAEAAIMAAWEKAGGDTSPLGARKGDVYPVGDGFA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEE
LDFDGGKMFFTPATGAKFAYGPILDKYESLGGPAGSDLGFPAINEVPGLAGPDSRVVTFS
EEECCCEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEEE
ASDKPVIFWTPEHGAYVVRGAINSAWDKLGSSGGVLGVPVGDETYNGEVSTQKFSGGQVS
CCCCEEEEECCCCCCEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCEE
WNRQTKQFSTEPPGLADQLKGLQVAIDPTAAINTAWRAAGGPGGPLGAKQGGPTPVGGDG
ECCCHHHCCCCCCCHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
IVQNFAGGKVFFTPATGANALESDILAKYESLGGPAGSDLGFPTTNETDGGIGPSSRIAT
HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE
FSAPDKPVIFWTADHGAFVVRGAMRAAWDKLRAPAGKLGAPVGDQAVDGDVISQQFTGGK
ECCCCCCEEEEECCCCCEEEHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHCCCCE
ISWNRAKNAFSTDPSNLAPLLSGLQISGQNQPSSSAMPAHPKKFSWHWWWLMAAVPVAVL
EEHHHCCCCCCCCHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LVLLIWVLFVWRRRRPGPEATGYGVDHGYDAAEGQWGHDDADVATEHFGAPPSGEPPAGS
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
GAAARVSWQRQAPADGGYGFEEEDPDAVDTDSIPVVSDEMLAEADYPAAEADYTDYTDAV
CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHCC
PEVAEPETADDAAYADADYAEVDYPDVGYREDEYPDLAVPHTPPDADAVTGGIPAAEADD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC
EYAELAAPQAQPEERPEPQPGPEEVAEAAGGAVAAGVAGTRPRSGRHAAADEEDASENGL
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
AGPDGRPTIHLPLEDPYQAPEGYPIKASARYGLYYTPGSDLYRDTLPELWLSSEEVAQAN
CCCCCCCEEECCCCCCCCCCCCCCEEECCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHC
GFTKAD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]