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The map label for this gene is acdA [H]

Identifier: 41408753

GI number: 41408753

Start: 2989854

End: 2991023

Strand: Direct

Name: acdA [H]

Synonym: MAP2655

Alternate gene names: 41408753

Gene position: 2989854-2991023 (Clockwise)

Preceding gene: 41408742

Following gene: 41408754

Centisome position: 61.9

GC content: 68.97

Gene sequence:

>1170_bases
GTGTCCGGCAAAATGGATTTCTGCTATCCCGCGGAAGTGGAACGGTTCCGCACCGAGCTGCGTGACTGGCTGTCGGACAA
CCTGACCGACGAGCTGGTGAAAGCACGCCGCTCCGGCGGCCGTGACGACGCCGCGTTCGAGATGCTGCGGGCGTGGAACC
AGACGATGGCCGACGCGGGATGGGCCGCGGTGTCCTGGCCGCGCGAATACGGTGGCCGCGGCGCGACGGTGCTCGAGCAG
CTGGTCTACACCGAGGAGACCACCCGGGCGCGAGCTCCCTTGCCGCTCAACGTCATTGGCTTGAACAACATCGCGCCGGC
GATCATGCAGTACGGCACCGAGGCGCAGAAGCAGCGGCTGCTGCCGCGCATGATGCGCGCCGACGACATCTGGTGCCAGG
GCATGTCGGAACCCGATGCGGGGTCCGACCTCGCGGCGCTGCGCACCCGTGCGGTGCGCGACGGTGACGACTTCGTGGTC
ACCGGGCAGAAGATCTGGACCTCGCTGGGCCACCGCGCCGACTGGTGCCAGCTTTATGTGCGCACCGATCCGGATGCGCC
CAAGCACAAGGGGATCTCGTGCCTGATCGTCGACATGACGCTGCCCGGCATCGAGGCCCGTCCACGGGTCACGCTGGGCG
GCGACGCCGATTTCGCCGAGGTCTTCTTTCACGACGTGCGGGTGCCGGCGGACGCGTTGCTCGGCCCGCTCAATGCGGGC
TGGCAGGTGGCCACCACCACGCTGAGCCACGAACGGGCCGGGGCCGCCCGGTTGTACGCAGAGATGCAGGTGCGGCTGGA
AGAGCTGGTGGACGATCTGGCCGCCGCCGGCACCGGCGCGCTGGACGACCCGGTCACGCTGCGGCGCCTCGGCGAACTCG
CGGTGCGGATCAAATATCTGGAAGTGCTGTGCCAGCGGTCGATTTCGGCCACCCTGCACGGCGGGTCGGAACTGGTGGCG
CTGGGGTCGGCCAGCCTGGCCAAAACGGTGTGGGGCGAGATCGGGCAGGACCTGGCCGCGCTGGCCTTCGACGTGCTGGG
CTCCCGCGACGACGGGCGGGCGTGGGCGAACTACCGGCTGACGTCGCGCTCGCTGACCATCGCGGGCGGCACCACGCAGA
TCAACAAGAACATCACCGCCCAACGGGTGTTGGGGTTGCCGCGCAAATGA

Upstream 100 bases:

>100_bases
GTCGGGAGCACATGATGATTGAGTTCACCGTCGGGTGGCGCCGTGTCACCGACGGCCGCTCGCGGCGTCGCGTCATTGAC
CTCGAATCCGCCCCGACGTA

Downstream 100 bases:

>100_bases
ACCTCGAACTCACCGACGAACAGGTGGCGCTGCGCGACACCACGCGGCGCTTCCTCGCCGAGAAGGCCCCGATCGCACAC
CACGTGCGCCGGCTGCTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MSGKMDFCYPAEVERFRTELRDWLSDNLTDELVKARRSGGRDDAAFEMLRAWNQTMADAGWAAVSWPREYGGRGATVLEQ
LVYTEETTRARAPLPLNVIGLNNIAPAIMQYGTEAQKQRLLPRMMRADDIWCQGMSEPDAGSDLAALRTRAVRDGDDFVV
TGQKIWTSLGHRADWCQLYVRTDPDAPKHKGISCLIVDMTLPGIEARPRVTLGGDADFAEVFFHDVRVPADALLGPLNAG
WQVATTTLSHERAGAARLYAEMQVRLEELVDDLAAAGTGALDDPVTLRRLGELAVRIKYLEVLCQRSISATLHGGSELVA
LGSASLAKTVWGEIGQDLAALAFDVLGSRDDGRAWANYRLTSRSLTIAGGTTQINKNITAQRVLGLPRK

Sequences:

>Translated_389_residues
MSGKMDFCYPAEVERFRTELRDWLSDNLTDELVKARRSGGRDDAAFEMLRAWNQTMADAGWAAVSWPREYGGRGATVLEQ
LVYTEETTRARAPLPLNVIGLNNIAPAIMQYGTEAQKQRLLPRMMRADDIWCQGMSEPDAGSDLAALRTRAVRDGDDFVV
TGQKIWTSLGHRADWCQLYVRTDPDAPKHKGISCLIVDMTLPGIEARPRVTLGGDADFAEVFFHDVRVPADALLGPLNAG
WQVATTTLSHERAGAARLYAEMQVRLEELVDDLAAAGTGALDDPVTLRRLGELAVRIKYLEVLCQRSISATLHGGSELVA
LGSASLAKTVWGEIGQDLAALAFDVLGSRDDGRAWANYRLTSRSLTIAGGTTQINKNITAQRVLGLPRK
>Mature_388_residues
SGKMDFCYPAEVERFRTELRDWLSDNLTDELVKARRSGGRDDAAFEMLRAWNQTMADAGWAAVSWPREYGGRGATVLEQL
VYTEETTRARAPLPLNVIGLNNIAPAIMQYGTEAQKQRLLPRMMRADDIWCQGMSEPDAGSDLAALRTRAVRDGDDFVVT
GQKIWTSLGHRADWCQLYVRTDPDAPKHKGISCLIVDMTLPGIEARPRVTLGGDADFAEVFFHDVRVPADALLGPLNAGW
QVATTTLSHERAGAARLYAEMQVRLEELVDDLAAAGTGALDDPVTLRRLGELAVRIKYLEVLCQRSISATLHGGSELVAL
GSASLAKTVWGEIGQDLAALAFDVLGSRDDGRAWANYRLTSRSLTIAGGTTQINKNITAQRVLGLPRK

Specific function: Involved in the degradation of long-chain fatty acids [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=245, Percent_Identity=29.3877551020408, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI226958414, Length=205, Percent_Identity=31.7073170731707, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI187960098, Length=342, Percent_Identity=27.1929824561404, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI4557231, Length=342, Percent_Identity=27.1929824561404, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI4501857, Length=392, Percent_Identity=26.0204081632653, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI4557233, Length=349, Percent_Identity=28.080229226361, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI4501859, Length=217, Percent_Identity=31.3364055299539, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI4557235, Length=289, Percent_Identity=28.3737024221453, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI76496475, Length=290, Percent_Identity=28.6206896551724, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI21361497, Length=275, Percent_Identity=25.4545454545455, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI211971008, Length=294, Percent_Identity=28.2312925170068, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI48976061, Length=294, Percent_Identity=28.2312925170068, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI7656849, Length=202, Percent_Identity=26.7326732673267, Blast_Score=73, Evalue=6e-13,
Organism=Escherichia coli, GI87081958, Length=392, Percent_Identity=23.2142857142857, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081702, Length=206, Percent_Identity=27.1844660194175, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538396, Length=213, Percent_Identity=29.5774647887324, Blast_Score=121, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17506239, Length=203, Percent_Identity=34.4827586206897, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17570075, Length=399, Percent_Identity=24.812030075188, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI32563615, Length=193, Percent_Identity=35.2331606217617, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17508101, Length=200, Percent_Identity=33, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17569725, Length=330, Percent_Identity=26.969696969697, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17534899, Length=189, Percent_Identity=32.8042328042328, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71990804, Length=221, Percent_Identity=30.7692307692308, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17505929, Length=203, Percent_Identity=29.5566502463054, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17551932, Length=203, Percent_Identity=29.5566502463054, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI71982178, Length=194, Percent_Identity=29.8969072164948, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71985184, Length=174, Percent_Identity=31.0344827586207, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71985192, Length=174, Percent_Identity=31.0344827586207, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17533517, Length=201, Percent_Identity=28.8557213930348, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21355753, Length=253, Percent_Identity=28.0632411067194, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24646207, Length=339, Percent_Identity=28.9085545722714, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281363737, Length=279, Percent_Identity=27.5985663082437, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21356377, Length=251, Percent_Identity=27.8884462151394, Blast_Score=92, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24660351, Length=151, Percent_Identity=34.4370860927152, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24666513, Length=202, Percent_Identity=29.2079207920792, Blast_Score=89, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42640; Mature: 42509

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS00072 ACYL_COA_DH_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKMDFCYPAEVERFRTELRDWLSDNLTDELVKARRSGGRDDAAFEMLRAWNQTMADAG
CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
WAAVSWPREYGGRGATVLEQLVYTEETTRARAPLPLNVIGLNNIAPAIMQYGTEAQKQRL
CCEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCHHHHHHH
LPRMMRADDIWCQGMSEPDAGSDLAALRTRAVRDGDDFVVTGQKIWTSLGHRADWCQLYV
HHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCEEEEEE
RTDPDAPKHKGISCLIVDMTLPGIEARPRVTLGGDADFAEVFFHDVRVPADALLGPLNAG
ECCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHCCCCCC
WQVATTTLSHERAGAARLYAEMQVRLEELVDDLAAAGTGALDDPVTLRRLGELAVRIKYL
CEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
EVLCQRSISATLHGGSELVALGSASLAKTVWGEIGQDLAALAFDVLGSRDDGRAWANYRL
HHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
TSRSLTIAGGTTQINKNITAQRVLGLPRK
ECCEEEEECCCEECCCCCHHHHHHCCCCC
>Mature Secondary Structure 
SGKMDFCYPAEVERFRTELRDWLSDNLTDELVKARRSGGRDDAAFEMLRAWNQTMADAG
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
WAAVSWPREYGGRGATVLEQLVYTEETTRARAPLPLNVIGLNNIAPAIMQYGTEAQKQRL
CCEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCHHHHHHH
LPRMMRADDIWCQGMSEPDAGSDLAALRTRAVRDGDDFVVTGQKIWTSLGHRADWCQLYV
HHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCEEEEEE
RTDPDAPKHKGISCLIVDMTLPGIEARPRVTLGGDADFAEVFFHDVRVPADALLGPLNAG
ECCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHCCCCCC
WQVATTTLSHERAGAARLYAEMQVRLEELVDDLAAAGTGALDDPVTLRRLGELAVRIKYL
CEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
EVLCQRSISATLHGGSELVALGSASLAKTVWGEIGQDLAALAFDVLGSRDDGRAWANYRL
HHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
TSRSLTIAGGTTQINKNITAQRVLGLPRK
ECCEEEEECCCEECCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]