| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is yusZ [H]
Identifier: 41408748
GI number: 41408748
Start: 2983702
End: 2984727
Strand: Reverse
Name: yusZ [H]
Synonym: MAP2650c
Alternate gene names: 41408748
Gene position: 2984727-2983702 (Counterclockwise)
Preceding gene: 41408749
Following gene: 41408747
Centisome position: 61.8
GC content: 71.54
Gene sequence:
>1026_bases ATGGCTGAGCCGCGCAGCGTCGTCATCACCGGCGCATCCCGCGGACTGGGGTTCGCCTCCGCGCTGCGGATGTATCGCGA AGGGTGGCGGGTGGTCGCCGCCATGCGAACACCGGATCAGGGAATGCCCCTGTTGCGCCGGGCCATTCGCGACGGCACCG GGCAGGACCCCGACGACGACCGGTTGATCGGCGTACAGCTCGATCTGACCGACAGCGCGTCGGTCGCCGCGGCCGCCAAG GCCATCGAGGAAGCCGTGGGCGCACCGTCTGCGATAGTGCACAACGCCGGGATCTCGGCCGCCGGAATGGTGGAGGAGAC CGATACGGCGTTGTGGCAGCGGATGTTCGCCACCAGCGTGCTGGGCCCGGTTGCGCTCACCCAGGCCCTGTTGCCGTCCA TGCGGGCCGCCGGGCGGGGGCGGATCGTCCTGGTGTCCAGCGCGGCCGGGGTTCGCGGCCAGCCCGGCACCGCGCCGTAC TCGGCGGCCAAGGGGGCGCTGGAACGGTGGGGCGAATCGCTGGCGGGCGAGATCGCGCCGTTCGGTTTGGGGGTGACGGT GTTGGTGGCCGGCACCTATGACACCGAGATCATCACCGACGCCGGCACCACCGACGACCGCAACTTCAGCGGCCCCTATG CCCGCCTGCACACCACCATGAACACCCGCGGGCGCTTGGCGGTCAGTTTCGCCCGGCGGCCCGAGCGGTTCACCGACGGC CTGTACAAGGCGCTGGACGACCGGGCGCCGTTCCGCCGCCGCGGGGTCGGCCCCGACGCGTCGGTGTTGTTGGCCGCCAA CAGGATCCTGCCGGCGTCGGGCATGCACCACCTGTCGCGGGTGGTGCTGGGCATACCGCGTCAGGGATCGATGCGGGACG GGGCGTGGCCGCTGACGCACGGCCAGCGGGCCATGGTGTTGGTGGCGCGGGTGCTTCCGCAGCCGGTGTTGCAGCGCCTG GCCGCGCTGGCCGGGCGGTTCTCGTCACCGAAAAGCGCGGCACGTCAAGGGGATCAAGAGGGGTAA
Upstream 100 bases:
>100_bases GGCATCTGGTCGACCTGGATGAGCGGGCAACCCCACGGCCGGCCCGACGTGCAGCCGCCACCACCCGGTGCGGGCGCCTG CGCGACCACCGCGGTCGGGC
Downstream 100 bases:
>100_bases TCATGGAGCAACTTTTCGACGACCTGGAAGACTTCGGCGCCTTCGACGACGCGGTCTCCGGGGACGTGCGCGACCCGTAC ACCGAATTGGCCCGGCTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MAEPRSVVITGASRGLGFASALRMYREGWRVVAAMRTPDQGMPLLRRAIRDGTGQDPDDDRLIGVQLDLTDSASVAAAAK AIEEAVGAPSAIVHNAGISAAGMVEETDTALWQRMFATSVLGPVALTQALLPSMRAAGRGRIVLVSSAAGVRGQPGTAPY SAAKGALERWGESLAGEIAPFGLGVTVLVAGTYDTEIITDAGTTDDRNFSGPYARLHTTMNTRGRLAVSFARRPERFTDG LYKALDDRAPFRRRGVGPDASVLLAANRILPASGMHHLSRVVLGIPRQGSMRDGAWPLTHGQRAMVLVARVLPQPVLQRL AALAGRFSSPKSAARQGDQEG
Sequences:
>Translated_341_residues MAEPRSVVITGASRGLGFASALRMYREGWRVVAAMRTPDQGMPLLRRAIRDGTGQDPDDDRLIGVQLDLTDSASVAAAAK AIEEAVGAPSAIVHNAGISAAGMVEETDTALWQRMFATSVLGPVALTQALLPSMRAAGRGRIVLVSSAAGVRGQPGTAPY SAAKGALERWGESLAGEIAPFGLGVTVLVAGTYDTEIITDAGTTDDRNFSGPYARLHTTMNTRGRLAVSFARRPERFTDG LYKALDDRAPFRRRGVGPDASVLLAANRILPASGMHHLSRVVLGIPRQGSMRDGAWPLTHGQRAMVLVARVLPQPVLQRL AALAGRFSSPKSAARQGDQEG >Mature_340_residues AEPRSVVITGASRGLGFASALRMYREGWRVVAAMRTPDQGMPLLRRAIRDGTGQDPDDDRLIGVQLDLTDSASVAAAAKA IEEAVGAPSAIVHNAGISAAGMVEETDTALWQRMFATSVLGPVALTQALLPSMRAAGRGRIVLVSSAAGVRGQPGTAPYS AAKGALERWGESLAGEIAPFGLGVTVLVAGTYDTEIITDAGTTDDRNFSGPYARLHTTMNTRGRLAVSFARRPERFTDGL YKALDDRAPFRRRGVGPDASVLLAANRILPASGMHHLSRVVLGIPRQGSMRDGAWPLTHGQRAMVLVARVLPQPVLQRLA ALAGRFSSPKSAARQGDQEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=199, Percent_Identity=35.1758793969849, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI7657478, Length=199, Percent_Identity=32.1608040201005, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI44680136, Length=201, Percent_Identity=30.3482587064677, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI44680133, Length=201, Percent_Identity=30.3482587064677, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI17738292, Length=201, Percent_Identity=30.3482587064677, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=29.5918367346939, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI4503817, Length=183, Percent_Identity=29.5081967213115, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI223718074, Length=253, Percent_Identity=30.0395256916996, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI50726952, Length=301, Percent_Identity=28.9036544850498, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI19743808, Length=285, Percent_Identity=28.7719298245614, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI150247226, Length=201, Percent_Identity=35.3233830845771, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI119392083, Length=211, Percent_Identity=29.3838862559242, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI157739938, Length=187, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI32483357, Length=198, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI22507405, Length=197, Percent_Identity=29.4416243654822, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI40254992, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI146231950, Length=150, Percent_Identity=35.3333333333333, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI5031737, Length=203, Percent_Identity=29.5566502463054, Blast_Score=66, Evalue=6e-11, Organism=Escherichia coli, GI1786701, Length=276, Percent_Identity=29.7101449275362, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787335, Length=205, Percent_Identity=30.7317073170732, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1790717, Length=202, Percent_Identity=22.2772277227723, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1786812, Length=202, Percent_Identity=26.7326732673267, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI87082100, Length=188, Percent_Identity=29.7872340425532, Blast_Score=62, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17507613, Length=289, Percent_Identity=26.9896193771626, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI32563809, Length=289, Percent_Identity=26.9896193771626, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17557780, Length=206, Percent_Identity=31.5533980582524, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115534660, Length=307, Percent_Identity=23.7785016286645, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17508895, Length=179, Percent_Identity=29.0502793296089, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17570069, Length=207, Percent_Identity=29.4685990338164, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17568967, Length=200, Percent_Identity=33.5, Blast_Score=69, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=207, Percent_Identity=27.0531400966184, Blast_Score=70, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6322067, Length=200, Percent_Identity=27.5, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=28.643216080402, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=33, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI21356301, Length=184, Percent_Identity=31.5217391304348, Blast_Score=81, Evalue=9e-16, Organism=Drosophila melanogaster, GI24651139, Length=196, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI28571526, Length=193, Percent_Identity=29.0155440414508, Blast_Score=75, Evalue=9e-14, Organism=Drosophila melanogaster, GI281364892, Length=177, Percent_Identity=29.9435028248588, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24641232, Length=211, Percent_Identity=30.8056872037915, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007236, Length=201, Percent_Identity=30.8457711442786, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI23397609, Length=215, Percent_Identity=29.3023255813954, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=26.9430051813472, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007238, Length=193, Percent_Identity=31.0880829015544, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI20128793, Length=223, Percent_Identity=26.457399103139, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 35995; Mature: 35863
Theoretical pI: Translated: 11.00; Mature: 11.00
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEPRSVVITGASRGLGFASALRMYREGWRVVAAMRTPDQGMPLLRRAIRDGTGQDPDDD CCCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC RLIGVQLDLTDSASVAAAAKAIEEAVGAPSAIVHNAGISAAGMVEETDTALWQRMFATSV CEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH LGPVALTQALLPSMRAAGRGRIVLVSSAAGVRGQPGTAPYSAAKGALERWGESLAGEIAP HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC FGLGVTVLVAGTYDTEIITDAGTTDDRNFSGPYARLHTTMNTRGRLAVSFARRPERFTDG CCCCEEEEEECCCCCEEEECCCCCCCCCCCCCHHHEEECCCCCCCEEEHHHHCCHHHHHH LYKALDDRAPFRRRGVGPDASVLLAANRILPASGMHHLSRVVLGIPRQGSMRDGAWPLTH HHHHHHCCCCHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC GQRAMVLVARVLPQPVLQRLAALAGRFSSPKSAARQGDQEG CCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCCCCCC >Mature Secondary Structure AEPRSVVITGASRGLGFASALRMYREGWRVVAAMRTPDQGMPLLRRAIRDGTGQDPDDD CCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC RLIGVQLDLTDSASVAAAAKAIEEAVGAPSAIVHNAGISAAGMVEETDTALWQRMFATSV CEEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH LGPVALTQALLPSMRAAGRGRIVLVSSAAGVRGQPGTAPYSAAKGALERWGESLAGEIAP HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC FGLGVTVLVAGTYDTEIITDAGTTDDRNFSGPYARLHTTMNTRGRLAVSFARRPERFTDG CCCCEEEEEECCCCCEEEECCCCCCCCCCCCCHHHEEECCCCCCCEEEHHHHCCHHHHHH LYKALDDRAPFRRRGVGPDASVLLAANRILPASGMHHLSRVVLGIPRQGSMRDGAWPLTH HHHHHHCCCCHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC GQRAMVLVARVLPQPVLQRLAALAGRFSSPKSAARQGDQEG CCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353931; 9384377; 8396117 [H]