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The map label for this gene is rnz [C]

Identifier: 41408521

GI number: 41408521

Start: 2720149

End: 2720976

Strand: Reverse

Name: rnz [C]

Synonym: MAP2423c

Alternate gene names: 41408521

Gene position: 2720976-2720149 (Counterclockwise)

Preceding gene: 41408522

Following gene: 41408520

Centisome position: 56.34

GC content: 67.39

Gene sequence:

>828_bases
ATGCGGCAATGTTTTCGTCATGGTCCCATCGGGCATGGCACAGTAGTGTCCGTGCGAATAACCGTGCTCGGCTGCTCGGG
CAGCGTGGTGGGTCCGGATTCGCCTGCGTCGGGTTATCTGCTTCGGGCACCGGATACTCCGCCCTTGGTCATCGACTTCG
GCGGGGGTGTGCTGGGCGCGCTGCAGCGCTACGCCGATCCCAGTTCGGTGCACGTGCTCCTGTCGCATCTGCATGCCGAT
CACTGCCTGGATCTGCCCGGGCTTTTCGTCTGGCGGCGCTATCACCCGACGCGCCCGCTCGGCAAGGCGATGCTGTACGG
CCCCGGCGACACCTGGTCGCGGTTGGGCGCGGCGTCGTCACCCTATGGCGGTGAAATCGATGATTGCTCAGACATTTTCG
ACGTTCGCCATTGGGTCGACGGCGAGCCGGTGACGATCGGAGGGTTGACGGTGACGCCGCGGGTGGTGGCCCATCCGACC
GAGTCCTACGGCTTGCGCGTCACCGATCACACCGGCGCGTCCTTCGTCTACAGCGGTGACACCGGCGCCTGCGATCAGCT
CGTCGAGCTGGCTCGCGGCGCCGATGTTTTTTTGTGCGAGGCCTCCTGGACGCATTCGCCCGACCGCCCGCCCGCGCTGC
ACCTGTCGGGCACCGAGGCGGGCCGGGCCGCGGCGCAGGCCGGCGTCCATGAGTTGTTGTTGACCCACATCCCGCCGTGG
ACCTCGCGGGAGGACGTCATCAGCGAGGCCAAGGCCGAGTTCGACGGCCCCGTGCACGCGGTGGTGTGCGGCGAGACGTT
CGACGTCCGCCGTTCCGAGAGGGTCTGA

Upstream 100 bases:

>100_bases
CCGATTGGCGGCCCGGTTCCTGGGTCCGGCCGTCTCGGGCGTCCGGCCTGTTCATCATGTGCGTATCGACTGACCCGCGG
ACGAGATTCTCGTCACACCA

Downstream 100 bases:

>100_bases
GCCGACCGGTTCGAGGTGGCTTAGGGTTACTGGGTGACGCGACGAGAAGACGGCCGCCTGGACGACGAGCTTCGCCCGCT
GGTGATCACCCGCGGGTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MRQCFRHGPIGHGTVVSVRITVLGCSGSVVGPDSPASGYLLRAPDTPPLVIDFGGGVLGALQRYADPSSVHVLLSHLHAD
HCLDLPGLFVWRRYHPTRPLGKAMLYGPGDTWSRLGAASSPYGGEIDDCSDIFDVRHWVDGEPVTIGGLTVTPRVVAHPT
ESYGLRVTDHTGASFVYSGDTGACDQLVELARGADVFLCEASWTHSPDRPPALHLSGTEAGRAAAQAGVHELLLTHIPPW
TSREDVISEAKAEFDGPVHAVVCGETFDVRRSERV

Sequences:

>Translated_275_residues
MRQCFRHGPIGHGTVVSVRITVLGCSGSVVGPDSPASGYLLRAPDTPPLVIDFGGGVLGALQRYADPSSVHVLLSHLHAD
HCLDLPGLFVWRRYHPTRPLGKAMLYGPGDTWSRLGAASSPYGGEIDDCSDIFDVRHWVDGEPVTIGGLTVTPRVVAHPT
ESYGLRVTDHTGASFVYSGDTGACDQLVELARGADVFLCEASWTHSPDRPPALHLSGTEAGRAAAQAGVHELLLTHIPPW
TSREDVISEAKAEFDGPVHAVVCGETFDVRRSERV
>Mature_275_residues
MRQCFRHGPIGHGTVVSVRITVLGCSGSVVGPDSPASGYLLRAPDTPPLVIDFGGGVLGALQRYADPSSVHVLLSHLHAD
HCLDLPGLFVWRRYHPTRPLGKAMLYGPGDTWSRLGAASSPYGGEIDDCSDIFDVRHWVDGEPVTIGGLTVTPRVVAHPT
ESYGLRVTDHTGASFVYSGDTGACDQLVELARGADVFLCEASWTHSPDRPPALHLSGTEAGRAAAQAGVHELLLTHIPPW
TSREDVISEAKAEFDGPVHAVVCGETFDVRRSERV

Specific function: Zinc Phosphodiesterase, Which Displays Some Trna 3'- Processing Endonuclease Activity. Probably Involved In Trna Maturation, By Removing A 3'Trailer From Precursor Trna. [C]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the atsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: NA

EC number: 3.1.26.11 [C]

Molecular weight: Translated: 29398; Mature: 29398

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQCFRHGPIGHGTVVSVRITVLGCSGSVVGPDSPASGYLLRAPDTPPLVIDFGGGVLGA
CCCCHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCCHHHHH
LQRYADPSSVHVLLSHLHADHCLDLPGLFVWRRYHPTRPLGKAMLYGPGDTWSRLGAASS
HHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCHHHHHCCCCC
PYGGEIDDCSDIFDVRHWVDGEPVTIGGLTVTPRVVAHPTESYGLRVTDHTGASFVYSGD
CCCCCCCCHHHHHHHHHHCCCCCEEECCEEECCEEEECCCCHHCEEEECCCCCEEEECCC
TGACDQLVELARGADVFLCEASWTHSPDRPPALHLSGTEAGRAAAQAGVHELLLTHIPPW
CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCC
TSREDVISEAKAEFDGPVHAVVCGETFDVRRSERV
CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MRQCFRHGPIGHGTVVSVRITVLGCSGSVVGPDSPASGYLLRAPDTPPLVIDFGGGVLGA
CCCCHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCCHHHHH
LQRYADPSSVHVLLSHLHADHCLDLPGLFVWRRYHPTRPLGKAMLYGPGDTWSRLGAASS
HHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCHHHHHCCCCC
PYGGEIDDCSDIFDVRHWVDGEPVTIGGLTVTPRVVAHPTESYGLRVTDHTGASFVYSGD
CCCCCCCCHHHHHHHHHHCCCCCEEECCEEECCEEEECCCCHHCEEEECCCCCEEEECCC
TGACDQLVELARGADVFLCEASWTHSPDRPPALHLSGTEAGRAAAQAGVHELLLTHIPPW
CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCC
TSREDVISEAKAEFDGPVHAVVCGETFDVRRSERV
CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]