| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is ygfF [C]
Identifier: 41408282
GI number: 41408282
Start: 2426043
End: 2426828
Strand: Reverse
Name: ygfF [C]
Synonym: MAP2184c
Alternate gene names: 41408282
Gene position: 2426828-2426043 (Counterclockwise)
Preceding gene: 41408283
Following gene: 41408281
Centisome position: 50.25
GC content: 70.99
Gene sequence:
>786_bases ATGCCCGGAGTGCTCGCCGGCAAGAGCGCCATCGTCACCGGCGCCGGCTCCGGGGTGGGCCGGGTGTCGGCGCTGCGGTT CGCCGAGGAGGGTGCGCGGGTGGTCGCCGCCGATATCGACCTCGACCACGCGAAAGAGACTGTCTGCCAAATCGAATCGG CCGGCGGCACCGCCATCGCGATCGGGACCGATGTCTCGGACGAGCAACAGGTGCAGGCGATGATCGCGGCCGCCGTCGAC CAGTACGGCCGGCTCGACATCCTGTTCAACAACGTCGGCATCCCGACGCCGCGGCTCGGCATGATCTTCGAGGACCACAC CCTCGAGGACTTCAACCGCCTGGTCGCGGTCAACCTCGGCGGGGTGTTCCTCGGCTGCAAGTACGCGGTGCTGCGCTTCA AGGAGCAGGGCGCGGGCGGGGTCATCCTCAACACCGCGTCGGTGGCCGGCCTGGTGGGCTGGGGCGGTTCGGTGTACGGC GCGACCAAGGGCGGGGTCATCCAGCTCACCCGGGCGGTCGCGATCGAGGCGGCGCCCTTCGGGATTCGCGTCAACGCGAT CTGCCCGGCGGCCATGCCGCTGACCGGTTTCATGGCGGCGGGCGGGCTGGAGGTCGACGCGGAGCAGCAGGCGGCGATCG CCGAATCGGTCGGGGGTCAGCATCCGCTGGGGCGCGCCATCACGGCCGAGGACTGCGCCGAGGCGGCGCTGTATCTGGTC TCGGACGCGGCGCGCAACGTCACCGGGGTGGCGCTGCCGGTCGACGGCGGGTTCGTGGCGAAATGA
Upstream 100 bases:
>100_bases AGGACCTCCCGGAGAACGTGCAATACAAGCTGTTGCGCGGCAATGCCGAAAAGCTCTACCGGTTCACCCCGGCCGAGCCC CCCGTCCTGGCGAGCGCCTG
Downstream 100 bases:
>100_bases CCGCTCCCGCACTGGATCGCGACCGACTGCGCGAGCTGTTCGACCTGCGCAGCTCCTACAACGCTTGGGCCGGCGGCGCA TACGAGGACGACCCGTACCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MPGVLAGKSAIVTGAGSGVGRVSALRFAEEGARVVAADIDLDHAKETVCQIESAGGTAIAIGTDVSDEQQVQAMIAAAVD QYGRLDILFNNVGIPTPRLGMIFEDHTLEDFNRLVAVNLGGVFLGCKYAVLRFKEQGAGGVILNTASVAGLVGWGGSVYG ATKGGVIQLTRAVAIEAAPFGIRVNAICPAAMPLTGFMAAGGLEVDAEQQAAIAESVGGQHPLGRAITAEDCAEAALYLV SDAARNVTGVALPVDGGFVAK
Sequences:
>Translated_261_residues MPGVLAGKSAIVTGAGSGVGRVSALRFAEEGARVVAADIDLDHAKETVCQIESAGGTAIAIGTDVSDEQQVQAMIAAAVD QYGRLDILFNNVGIPTPRLGMIFEDHTLEDFNRLVAVNLGGVFLGCKYAVLRFKEQGAGGVILNTASVAGLVGWGGSVYG ATKGGVIQLTRAVAIEAAPFGIRVNAICPAAMPLTGFMAAGGLEVDAEQQAAIAESVGGQHPLGRAITAEDCAEAALYLV SDAARNVTGVALPVDGGFVAK >Mature_260_residues PGVLAGKSAIVTGAGSGVGRVSALRFAEEGARVVAADIDLDHAKETVCQIESAGGTAIAIGTDVSDEQQVQAMIAAAVDQ YGRLDILFNNVGIPTPRLGMIFEDHTLEDFNRLVAVNLGGVFLGCKYAVLRFKEQGAGGVILNTASVAGLVGWGGSVYGA TKGGVIQLTRAVAIEAAPFGIRVNAICPAAMPLTGFMAAGGLEVDAEQQAAIAESVGGQHPLGRAITAEDCAEAALYLVS DAARNVTGVALPVDGGFVAK
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=31.0077519379845, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI31542939, Length=234, Percent_Identity=31.1965811965812, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=32.7659574468085, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=29.6442687747036, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=33.7301587301587, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI4758504, Length=197, Percent_Identity=35.0253807106599, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI7705925, Length=264, Percent_Identity=32.1969696969697, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=28.030303030303, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI4504505, Length=200, Percent_Identity=35, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=31.3953488372093, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI83715985, Length=190, Percent_Identity=33.6842105263158, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI10190704, Length=262, Percent_Identity=30.5343511450382, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=32, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=28.125, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4503817, Length=202, Percent_Identity=28.7128712871287, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI126723750, Length=260, Percent_Identity=26.5384615384615, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=27.8688524590164, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI109715829, Length=243, Percent_Identity=28.3950617283951, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI40254986, Length=165, Percent_Identity=31.5151515151515, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=38.1889763779528, Blast_Score=127, Evalue=5e-31, Organism=Escherichia coli, GI1789208, Length=262, Percent_Identity=32.4427480916031, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=34.9019607843137, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=30.6201550387597, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1787335, Length=253, Percent_Identity=32.4110671936759, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=30.859375, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=30.9803921568627, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=29.6875, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=30.1158301158301, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=29.2490118577075, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=29.3436293436293, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787820, Length=234, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=32.4110671936759, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=31.3492063492063, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI25147288, Length=265, Percent_Identity=33.9622641509434, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=33.4630350194552, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=30.6201550387597, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=28.7822878228782, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI193204405, Length=210, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=30.0380228136882, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17562904, Length=272, Percent_Identity=31.25, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=28.8389513108614, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=34.2245989304813, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=29.6577946768061, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=31.6981132075472, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=30.7984790874525, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=31.2267657992565, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=33.8461538461538, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=30.2681992337165, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17551412, Length=271, Percent_Identity=29.8892988929889, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=30.5660377358491, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=25.187969924812, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI115534694, Length=259, Percent_Identity=30.5019305019305, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=30.7984790874525, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI193203117, Length=188, Percent_Identity=31.3829787234043, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193203115, Length=186, Percent_Identity=31.7204301075269, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=27.6752767527675, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=29.368029739777, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17538182, Length=192, Percent_Identity=34.8958333333333, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538486, Length=206, Percent_Identity=30.5825242718447, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17508895, Length=204, Percent_Identity=27.9411764705882, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71982365, Length=198, Percent_Identity=30.3030303030303, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17558628, Length=227, Percent_Identity=31.2775330396476, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=26.3565891472868, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=27.5193798449612, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=27.3076923076923, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71997099, Length=201, Percent_Identity=29.3532338308458, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=203, Percent_Identity=36.4532019704434, Blast_Score=99, Evalue=8e-22, Organism=Saccharomyces cerevisiae, GI6324126, Length=262, Percent_Identity=29.3893129770992, Blast_Score=77, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=35.9073359073359, Blast_Score=131, Evalue=4e-31, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=35.546875, Blast_Score=127, Evalue=7e-30, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=36.5079365079365, Blast_Score=127, Evalue=8e-30, Organism=Drosophila melanogaster, GI24639444, Length=259, Percent_Identity=36.2934362934363, Blast_Score=121, Evalue=6e-28, Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=33.8582677165354, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI17737361, Length=194, Percent_Identity=34.020618556701, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI18859837, Length=200, Percent_Identity=38, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI21355319, Length=263, Percent_Identity=28.8973384030418, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=30.46875, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=31.25, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21357673, Length=200, Percent_Identity=31.5, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24665247, Length=193, Percent_Identity=34.1968911917098, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI221331216, Length=193, Percent_Identity=34.1968911917098, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24665243, Length=192, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221331218, Length=192, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI281364892, Length=223, Percent_Identity=32.2869955156951, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24649181, Length=177, Percent_Identity=29.9435028248588, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI21355631, Length=167, Percent_Identity=30.5389221556886, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26436; Mature: 26305
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGVLAGKSAIVTGAGSGVGRVSALRFAEEGARVVAADIDLDHAKETVCQIESAGGTAIA CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHEEECCCCEEEE IGTDVSDEQQVQAMIAAAVDQYGRLDILFNNVGIPTPRLGMIFEDHTLEDFNRLVAVNLG EECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCHHHHHEEEEEECC GVFLGCKYAVLRFKEQGAGGVILNTASVAGLVGWGGSVYGATKGGVIQLTRAVAIEAAPF CEEHHHHEEEEEEECCCCCEEEEECHHHHEEECCCCEEECCCCCCCEEEEEEEEEEECCC GIRVNAICPAAMPLTGFMAAGGLEVDAEQQAAIAESVGGQHPLGRAITAEDCAEAALYLV CEEEEEECCCCCCHHHHHHCCCCEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH SDAARNVTGVALPVDGGFVAK HHHCCCCEEEEEECCCCEECC >Mature Secondary Structure PGVLAGKSAIVTGAGSGVGRVSALRFAEEGARVVAADIDLDHAKETVCQIESAGGTAIA CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHEEECCCCEEEE IGTDVSDEQQVQAMIAAAVDQYGRLDILFNNVGIPTPRLGMIFEDHTLEDFNRLVAVNLG EECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCHHHHHEEEEEECC GVFLGCKYAVLRFKEQGAGGVILNTASVAGLVGWGGSVYGATKGGVIQLTRAVAIEAAPF CEEHHHHEEEEEEECCCCCEEEEECHHHHEEECCCCEEECCCCCCCEEEEEEEEEEECCC GIRVNAICPAAMPLTGFMAAGGLEVDAEQQAAIAESVGGQHPLGRAITAEDCAEAALYLV CEEEEEECCCCCCHHHHHHCCCCEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH SDAARNVTGVALPVDGGFVAK HHHCCCCEEEEEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]