| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41408283
Identifier: 41408283
GI number: 41408283
Start: 2426828
End: 2428057
Strand: Reverse
Name: 41408283
Synonym: MAP2185c
Alternate gene names: NA
Gene position: 2428057-2426828 (Counterclockwise)
Preceding gene: 41408284
Following gene: 41408282
Centisome position: 50.27
GC content: 64.23
Gene sequence:
>1230_bases ATGAGCTCAGAAACCAACGGAGATAAGACATACAACCTGGACTGGCTGATCTCGGTCGACGACCACATCCTCGAGCCGCC AAACCTGTGGGTCGACCGGGTCGCCGCCAAGGACCGCGACCGCGCCCCGCACATGGAGAAGAACGACCAGGGCGTGGACA ACTGGGTCTACGACGGCAAGCGCTACCCGAACTCGGGCCTGAGCGCCGTCGTCGGAAAGTCCAAGGAGGAGTTCAGCCCC GAGCCGCTGTCCTACTCCGAGATGCGCCCAGGCTGCTATGACGCCAAGGCCCGCGTCGAGGACATGGACCGCTCGGGTGT GCTTGCGTCGCTGTGCTTTCCGACGATCACGCGGTTCTGCGGCCAGCTATTCATGGAGGCCAGCGACCGCGAATTCGGGT TCGAGTGTCTGCAGCACTACAACGACTGGCTCGTCGAGGAATGGTGTGGTGCCGCCCCCGGCCGCTACATCCCGCTGATG CTGATCCCGATGTGGGACCCGAAACTGGCCGCCAAGGAGATGGAGCGGATGGCCGCCAAGGGCGTGACGTCCTTCGCGTT CTCGGAAAACCCGGAACCGTTGGGGCTGCCTACCATTCACGACCCCGCGGGCTACTGGGAACCGGTGATGGCCGCGGCCA ACGAACTCGAAATGGTGGCCAGCATGCACGTCGGCTCCTCGTCGACCCTGCCCAAGATCTGTTCGGACGCGCCGTTCATG GCCAACCTCACCTGGGGTGCCTCCCGCACCTCGGGAACGATGCTGTCCTGGTTGTTCAGCGGCATGTTCCAGCGCTACCC CAAGCTGAAGATCGCGCTGTCCGAGGGTGAGGTCGGCTGGATGCCCTACTTCCTGGAGCGCGCCGAACAGGTGCTGGACA AGCAGCGGTACTGGGTGATGCGCGGCGCGAAGTTCGACACCCACGCCGGCGCCGGCCAGGCGATCGACCTCGACACCCTC GACATCCGCGAGACGTTCCGCAACCACATCTACGGCTGCATCATCGAAGACCGCCACGCCGTCAAGAGTTTGGACGAGAT CGGCGAGGACAACATCATGTGCGAAACGGACTACCCGCACTCGGACTCCACCTGGCCCGACTGCATCGGCGTCGCCCGCA ACACCATGAAGGACCTCCCGGAGAACGTGCAATACAAGCTGTTGCGCGGCAATGCCGAAAAGCTCTACCGGTTCACCCCG GCCGAGCCCCCCGTCCTGGCGAGCGCCTGA
Upstream 100 bases:
>100_bases CGAGCGGCGGATACAAGCAAAGCGGTCTGGGCCGCGAACGGGGTCCGGACGGCATTCGCGAGTTCCAGGAGGTCAAGCAC ATGTCGATTGGGGAGTTGAA
Downstream 100 bases:
>100_bases TGCCCGGAGTGCTCGCCGGCAAGAGCGCCATCGTCACCGGCGCCGGCTCCGGGGTGGGCCGGGTGTCGGCGCTGCGGTTC GCCGAGGAGGGTGCGCGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Amidase; Amidohydrolase Family Protein; Hydrolase; Barh Protein; Aminocarboxymuconate-Semialdehyde Decarboxylase; Amidohydrolase Family; TIM-Barrel Fold Metal-Dependent Hydrolase; Minocarboxymuconate-Semialdehyde Decarboxylase.; Metal-Dependent Amidohydrolase; Amidohydrolase 2 Protein
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MSSETNGDKTYNLDWLISVDDHILEPPNLWVDRVAAKDRDRAPHMEKNDQGVDNWVYDGKRYPNSGLSAVVGKSKEEFSP EPLSYSEMRPGCYDAKARVEDMDRSGVLASLCFPTITRFCGQLFMEASDREFGFECLQHYNDWLVEEWCGAAPGRYIPLM LIPMWDPKLAAKEMERMAAKGVTSFAFSENPEPLGLPTIHDPAGYWEPVMAAANELEMVASMHVGSSSTLPKICSDAPFM ANLTWGASRTSGTMLSWLFSGMFQRYPKLKIALSEGEVGWMPYFLERAEQVLDKQRYWVMRGAKFDTHAGAGQAIDLDTL DIRETFRNHIYGCIIEDRHAVKSLDEIGEDNIMCETDYPHSDSTWPDCIGVARNTMKDLPENVQYKLLRGNAEKLYRFTP AEPPVLASA
Sequences:
>Translated_409_residues MSSETNGDKTYNLDWLISVDDHILEPPNLWVDRVAAKDRDRAPHMEKNDQGVDNWVYDGKRYPNSGLSAVVGKSKEEFSP EPLSYSEMRPGCYDAKARVEDMDRSGVLASLCFPTITRFCGQLFMEASDREFGFECLQHYNDWLVEEWCGAAPGRYIPLM LIPMWDPKLAAKEMERMAAKGVTSFAFSENPEPLGLPTIHDPAGYWEPVMAAANELEMVASMHVGSSSTLPKICSDAPFM ANLTWGASRTSGTMLSWLFSGMFQRYPKLKIALSEGEVGWMPYFLERAEQVLDKQRYWVMRGAKFDTHAGAGQAIDLDTL DIRETFRNHIYGCIIEDRHAVKSLDEIGEDNIMCETDYPHSDSTWPDCIGVARNTMKDLPENVQYKLLRGNAEKLYRFTP AEPPVLASA >Mature_408_residues SSETNGDKTYNLDWLISVDDHILEPPNLWVDRVAAKDRDRAPHMEKNDQGVDNWVYDGKRYPNSGLSAVVGKSKEEFSPE PLSYSEMRPGCYDAKARVEDMDRSGVLASLCFPTITRFCGQLFMEASDREFGFECLQHYNDWLVEEWCGAAPGRYIPLML IPMWDPKLAAKEMERMAAKGVTSFAFSENPEPLGLPTIHDPAGYWEPVMAAANELEMVASMHVGSSSTLPKICSDAPFMA NLTWGASRTSGTMLSWLFSGMFQRYPKLKIALSEGEVGWMPYFLERAEQVLDKQRYWVMRGAKFDTHAGAGQAIDLDTLD IRETFRNHIYGCIIEDRHAVKSLDEIGEDNIMCETDYPHSDSTWPDCIGVARNTMKDLPENVQYKLLRGNAEKLYRFTPA EPPVLASA
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46190; Mature: 46058
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSETNGDKTYNLDWLISVDDHILEPPNLWVDRVAAKDRDRAPHMEKNDQGVDNWVYDGK CCCCCCCCEEEEEEEEEECCHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCC RYPNSGLSAVVGKSKEEFSPEPLSYSEMRPGCYDAKARVEDMDRSGVLASLCFPTITRFC CCCCCCCHHHHCCCHHHCCCCCCCHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH GQLFMEASDREFGFECLQHYNDWLVEEWCGAAPGRYIPLMLIPMWDPKLAAKEMERMAAK HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHC GVTSFAFSENPEPLGLPTIHDPAGYWEPVMAAANELEMVASMHVGSSSTLPKICSDAPFM CCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCE ANLTWGASRTSGTMLSWLFSGMFQRYPKLKIALSEGEVGWMPYFLERAEQVLDKQRYWVM EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEE RGAKFDTHAGAGQAIDLDTLDIRETFRNHIYGCIIEDRHAVKSLDEIGEDNIMCETDYPH ECCCCCCCCCCCCEECCCHHHHHHHHHHCEEEEEECCHHHHHHHHHHCCCCEEECCCCCC SDSTWPDCIGVARNTMKDLPENVQYKLLRGNAEKLYRFTPAEPPVLASA CCCCCHHHHHHHHHHHHHCCHHHEEEEECCCHHHHEEECCCCCCCCCCC >Mature Secondary Structure SSETNGDKTYNLDWLISVDDHILEPPNLWVDRVAAKDRDRAPHMEKNDQGVDNWVYDGK CCCCCCCEEEEEEEEEECCHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCC RYPNSGLSAVVGKSKEEFSPEPLSYSEMRPGCYDAKARVEDMDRSGVLASLCFPTITRFC CCCCCCCHHHHCCCHHHCCCCCCCHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH GQLFMEASDREFGFECLQHYNDWLVEEWCGAAPGRYIPLMLIPMWDPKLAAKEMERMAAK HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHC GVTSFAFSENPEPLGLPTIHDPAGYWEPVMAAANELEMVASMHVGSSSTLPKICSDAPFM CCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCE ANLTWGASRTSGTMLSWLFSGMFQRYPKLKIALSEGEVGWMPYFLERAEQVLDKQRYWVM EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEE RGAKFDTHAGAGQAIDLDTLDIRETFRNHIYGCIIEDRHAVKSLDEIGEDNIMCETDYPH ECCCCCCCCCCCCEECCCHHHHHHHHHHCEEEEEECCHHHHHHHHHHCCCCEEECCCCCC SDSTWPDCIGVARNTMKDLPENVQYKLLRGNAEKLYRFTPAEPPVLASA CCCCCHHHHHHHHHHHHHCCHHHEEEEECCCHHHHEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA