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The map label for this gene is sodC [H]

Identifier: 41408229

GI number: 41408229

Start: 2361278

End: 2361895

Strand: Reverse

Name: sodC [H]

Synonym: MAP2131c

Alternate gene names: 41408229

Gene position: 2361895-2361278 (Counterclockwise)

Preceding gene: 41408230

Following gene: 41408228

Centisome position: 48.9

GC content: 69.58

Gene sequence:

>618_bases
ATGAAGAAAATCAGCGGCTCGCCCTGCATCGCCACCCTCTTGATGGGGCTTCCGGTTCTCGCCATGACCGCGTGCAGTTC
ACCGCAGCACGCGAGCACCCAGCCGGGCACCACCCCGCCGGTGAAAAGCGCCGCACCCACGTCCTCCGGTGCGACGACCA
CCCCGGCGCCCGGCGGCGGGGCGCTGACCGCGGAACTGAAGACGCCCGACGGCCGGTCGGTGGCCACCGCGACCTTCGAC
TTCACCGGGGGCTACGTCACCGTCACCGTGAAGACGGTGGCCAACGGCGTCCTGACGCCCGGCCTGCACGGCCTGCACGT
GCACGAGATCGGCAAGTGCGAGCCGAACTCGGTGGCCCCCACCGGCGGTGCGCCCGGGAACTTCCTGTCCGCCGGCGGTC
ACTACCAGGCCCCCGGCCACACCGGCAAGCCGGAAAGCGGCGATCTGGCCACGCTGCAGGTGCGCCAGGACGGCGCGGCC
TATCTGGTCACCACTACCGATGCGTTCACCCGCGACGAGCTGTTGGCCGGTAACAAGACTGCGTTGATGCTGCACGGCGC
CGAGGACACCGAAAACGCGATGGACCGGGTTGCCTGCGGTGTCATCGGTACCGGATAG

Upstream 100 bases:

>100_bases
GAACGCATCGACGCCCGCCAGGCCGGTCCGTAGCGCCGCGCCGGCGACAAGTCGCGCGGCCCGGGAAGCGGCGCGGGCGC
GGCGAGTTAGGCTCCCCGAT

Downstream 100 bases:

>100_bases
CTTTTCCGTACCCGGCGCGCTGCGCGCCTTACACTGAGCCGATGTCCAGCCCGGCAGGTTCACGCGCCCAGGGCGATGGC
CGTGCCCGGGGCCGGGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKKISGSPCIATLLMGLPVLAMTACSSPQHASTQPGTTPPVKSAAPTSSGATTTPAPGGGALTAELKTPDGRSVATATFD
FTGGYVTVTVKTVANGVLTPGLHGLHVHEIGKCEPNSVAPTGGAPGNFLSAGGHYQAPGHTGKPESGDLATLQVRQDGAA
YLVTTTDAFTRDELLAGNKTALMLHGAEDTENAMDRVACGVIGTG

Sequences:

>Translated_205_residues
MKKISGSPCIATLLMGLPVLAMTACSSPQHASTQPGTTPPVKSAAPTSSGATTTPAPGGGALTAELKTPDGRSVATATFD
FTGGYVTVTVKTVANGVLTPGLHGLHVHEIGKCEPNSVAPTGGAPGNFLSAGGHYQAPGHTGKPESGDLATLQVRQDGAA
YLVTTTDAFTRDELLAGNKTALMLHGAEDTENAMDRVACGVIGTG
>Mature_205_residues
MKKISGSPCIATLLMGLPVLAMTACSSPQHASTQPGTTPPVKSAAPTSSGATTTPAPGGGALTAELKTPDGRSVATATFD
FTGGYVTVTVKTVANGVLTPGLHGLHVHEIGKCEPNSVAPTGGAPGNFLSAGGHYQAPGHTGKPESGDLATLQVRQDGAA
YLVTTTDAFTRDELLAGNKTALMLHGAEDTENAMDRVACGVIGTG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May play a role in favoring mycobacterial survival in phagocytes [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 20450; Mature: 20450

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKISGSPCIATLLMGLPVLAMTACSSPQHASTQPGTTPPVKSAAPTSSGATTTPAPGGG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ALTAELKTPDGRSVATATFDFTGGYVTVTVKTVANGVLTPGLHGLHVHEIGKCEPNSVAP
EEEEEEECCCCCEEEEEEEECCCCEEEEEEEHHCCCCCCCCCCCEEEEECCCCCCCCCCC
TGGAPGNFLSAGGHYQAPGHTGKPESGDLATLQVRQDGAAYLVTTTDAFTRDELLAGNKT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCHHHHCCCCE
ALMLHGAEDTENAMDRVACGVIGTG
EEEEECCCCHHHHHHHHHHEEECCC
>Mature Secondary Structure
MKKISGSPCIATLLMGLPVLAMTACSSPQHASTQPGTTPPVKSAAPTSSGATTTPAPGGG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ALTAELKTPDGRSVATATFDFTGGYVTVTVKTVANGVLTPGLHGLHVHEIGKCEPNSVAP
EEEEEEECCCCCEEEEEEEECCCCEEEEEEEHHCCCCCCCCCCCEEEEECCCCCCCCCCC
TGGAPGNFLSAGGHYQAPGHTGKPESGDLATLQVRQDGAAYLVTTTDAFTRDELLAGNKT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCHHHHCCCCE
ALMLHGAEDTENAMDRVACGVIGTG
EEEEECCCCHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]