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The map label for this gene is ycdM [C]

Identifier: 41408061

GI number: 41408061

Start: 2166790

End: 2167650

Strand: Reverse

Name: ycdM [C]

Synonym: MAP1963c

Alternate gene names: 41408061

Gene position: 2167650-2166790 (Counterclockwise)

Preceding gene: 41408062

Following gene: 41408059

Centisome position: 44.88

GC content: 68.29

Gene sequence:

>861_bases
GTGAGGTTCTACGTCAGCAGCGCCTTCTTGAACACCCGGGAGATCATCGAGATCGCCAGGGCCGCAGACGAACTCGGCTA
CGACGGGATCGGCATCCCCGACCATGTCGTCAACCTGGAGACGCTGGACACCCCCTACCCGTACACCAGGGACGGGCAGC
GGCGCTGGCAGCCGTTCACCGACTGGCCCGACCCGTGGGTGCTCATCGGGGCGCTCGCCCAGGTCACCACCCGACTGCGG
TTCGTCAACACCGTTTACATCCCGGCGATGCGCAACCCGTACTCGGCGGCCAAAGCCATTGGCACCGCGGCGGTTCTGGC
GTCGGGCCGGGTGGAGCTGGGCGTCGGCGTCGGCTGGTGCCGCGAGGAATTCGCGTTGATGGGGGAGCGGTTCGAGGCGC
GCGGCAAACGCACCGACGAGATCATCGAGCTGATGCGGGCGCTGTGGGCGCCGGGCTGGACGGAGTTCGACGGCGAGTTC
TACTCCGCGCCGCGGCTGGAGATGCAGCCCACCCCGCCGCCGATCCCGGTGTATGTGGGCGGGCTGTCGGACATCGCGCT
GCGCCGCGCCGCCCGCAACGACGGCTGGATCGGCGACCTGATCAAGACCGAGCGGGCCATCGAGGCGGTCGGCCGGCTGC
GCGAGCTGCGCGCCGAAAACGGTTTGACGATGGACGATTTCACCATCCTGACGCCGCTGACCGACGCGTTCACCACCGCC
GATTACCGACGCGCCGAGGATGCCGGCATCACCGGGATCATCACCATGCCGTGGATGTTCTACGCTGGGCCGCAGGCGTC
ACTGGACGACAAGATCGACGGCATGCAGCGGTTCCGCAAGGACCTCGCGCTGGACGGGTAG

Upstream 100 bases:

>100_bases
GCGTCAAAGTCTTTGCCCGAGGCACCATTTCGGATGCCGCGGGAGTCACCGTCGAGGCCGACGGCGTGTTCATCGAGCCG
GCCTGGGCGCGGGAGACGCA

Downstream 100 bases:

>100_bases
GGCTGGACACCTGCGCCGGCTTCGGCTGAGCCCCACGACACTTACCCGGTGGCGCCGACACGCCGGCGCGGGCCGCCATG
GCTTACGTCTCGCGGAACCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRFYVSSAFLNTREIIEIARAADELGYDGIGIPDHVVNLETLDTPYPYTRDGQRRWQPFTDWPDPWVLIGALAQVTTRLR
FVNTVYIPAMRNPYSAAKAIGTAAVLASGRVELGVGVGWCREEFALMGERFEARGKRTDEIIELMRALWAPGWTEFDGEF
YSAPRLEMQPTPPPIPVYVGGLSDIALRRAARNDGWIGDLIKTERAIEAVGRLRELRAENGLTMDDFTILTPLTDAFTTA
DYRRAEDAGITGIITMPWMFYAGPQASLDDKIDGMQRFRKDLALDG

Sequences:

>Translated_286_residues
MRFYVSSAFLNTREIIEIARAADELGYDGIGIPDHVVNLETLDTPYPYTRDGQRRWQPFTDWPDPWVLIGALAQVTTRLR
FVNTVYIPAMRNPYSAAKAIGTAAVLASGRVELGVGVGWCREEFALMGERFEARGKRTDEIIELMRALWAPGWTEFDGEF
YSAPRLEMQPTPPPIPVYVGGLSDIALRRAARNDGWIGDLIKTERAIEAVGRLRELRAENGLTMDDFTILTPLTDAFTTA
DYRRAEDAGITGIITMPWMFYAGPQASLDDKIDGMQRFRKDLALDG
>Mature_286_residues
MRFYVSSAFLNTREIIEIARAADELGYDGIGIPDHVVNLETLDTPYPYTRDGQRRWQPFTDWPDPWVLIGALAQVTTRLR
FVNTVYIPAMRNPYSAAKAIGTAAVLASGRVELGVGVGWCREEFALMGERFEARGKRTDEIIELMRALWAPGWTEFDGEF
YSAPRLEMQPTPPPIPVYVGGLSDIALRRAARNDGWIGDLIKTERAIEAVGRLRELRAENGLTMDDFTILTPLTDAFTTA
DYRRAEDAGITGIITMPWMFYAGPQASLDDKIDGMQRFRKDLALDG

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 32101; Mature: 32101

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFYVSSAFLNTREIIEIARAADELGYDGIGIPDHVVNLETLDTPYPYTRDGQRRWQPFT
CEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCCCCCCCCCHHCCCCCC
DWPDPWVLIGALAQVTTRLRFVNTVYIPAMRNPYSAAKAIGTAAVLASGRVELGVGVGWC
CCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCHHH
REEFALMGERFEARGKRTDEIIELMRALWAPGWTEFDGEFYSAPRLEMQPTPPPIPVYVG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEC
GLSDIALRRAARNDGWIGDLIKTERAIEAVGRLRELRAENGLTMDDFTILTPLTDAFTTA
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH
DYRRAEDAGITGIITMPWMFYAGPQASLDDKIDGMQRFRKDLALDG
HHHHHHCCCCEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRFYVSSAFLNTREIIEIARAADELGYDGIGIPDHVVNLETLDTPYPYTRDGQRRWQPFT
CEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCCCCCCCCCHHCCCCCC
DWPDPWVLIGALAQVTTRLRFVNTVYIPAMRNPYSAAKAIGTAAVLASGRVELGVGVGWC
CCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCHHH
REEFALMGERFEARGKRTDEIIELMRALWAPGWTEFDGEFYSAPRLEMQPTPPPIPVYVG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEC
GLSDIALRRAARNDGWIGDLIKTERAIEAVGRLRELRAENGLTMDDFTILTPLTDAFTTA
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH
DYRRAEDAGITGIITMPWMFYAGPQASLDDKIDGMQRFRKDLALDG
HHHHHHCCCCEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]