| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41408062
Identifier: 41408062
GI number: 41408062
Start: 2167647
End: 2168204
Strand: Reverse
Name: 41408062
Synonym: MAP1964c
Alternate gene names: NA
Gene position: 2168204-2167647 (Counterclockwise)
Preceding gene: 41408063
Following gene: 41408061
Centisome position: 44.89
GC content: 72.04
Gene sequence:
>558_bases TTGGCCGATGCGGTCCGCGAGCTCGTCGACGCCACCATCCGGACCGAGGTTGACGACGCCGTCGTCGCCGAAGCCCGCTC GGCGATCGAGGCGGTCACCGCGTCGCTGCGGCGACGGACCCGGCCGGTGGGGGTGAGCTACCGGGTCAACGGCCGGCCGC TGCCGTTGGGCAACGCCGCGATCGGCGTGTGCAATCCGATCGCCCCGCCGATCGTCGTGCACCACGAGGGCGACGGGCGC TGCTGGAGCGAGTTCGTCCTCGGCTCGGCCTACGAGGGGCCGCCGCGGCTGGTGCACGGCGGCGTCAGCGCCCTGGTGCT CGACCACATGCTCGGTGAGGCGGCCAGCGAAGGGCTGTCCAAGGCGCGGTTCACCGGCACCATCACCGTGAAATACCTGC GCGGCACGCCGCTGGGCCCACTGCGCTGCGACGCCTGGATCGACCGTCGCGAGGGCGTCAAAGTCTTTGCCCGAGGCACC ATTTCGGATGCCGCGGGAGTCACCGTCGAGGCCGACGGCGTGTTCATCGAGCCGGCCTGGGCGCGGGAGACGCAGTGA
Upstream 100 bases:
>100_bases AGGTGTTCGGAAGTTGAGTCAGGAGGCCGGCGCGTTGGACGCCATATTCGAGGTGCTCGACGCGGCGGAGGCCGAACGGG TGACCGCACTGTATGCCCCG
Downstream 100 bases:
>100_bases GGTTCTACGTCAGCAGCGCCTTCTTGAACACCCGGGAGATCATCGAGATCGCCAGGGCCGCAGACGAACTCGGCTACGAC GGGATCGGCATCCCCGACCA
Product: hypothetical protein
Products: NA
Alternate protein names: Thioesterase Family Protein; Thioesterase; Aromatic Compounds Degradation Protein PaaI
Number of amino acids: Translated: 185; Mature: 184
Protein sequence:
>185_residues MADAVRELVDATIRTEVDDAVVAEARSAIEAVTASLRRRTRPVGVSYRVNGRPLPLGNAAIGVCNPIAPPIVVHHEGDGR CWSEFVLGSAYEGPPRLVHGGVSALVLDHMLGEAASEGLSKARFTGTITVKYLRGTPLGPLRCDAWIDRREGVKVFARGT ISDAAGVTVEADGVFIEPAWARETQ
Sequences:
>Translated_185_residues MADAVRELVDATIRTEVDDAVVAEARSAIEAVTASLRRRTRPVGVSYRVNGRPLPLGNAAIGVCNPIAPPIVVHHEGDGR CWSEFVLGSAYEGPPRLVHGGVSALVLDHMLGEAASEGLSKARFTGTITVKYLRGTPLGPLRCDAWIDRREGVKVFARGT ISDAAGVTVEADGVFIEPAWARETQ >Mature_184_residues ADAVRELVDATIRTEVDDAVVAEARSAIEAVTASLRRRTRPVGVSYRVNGRPLPLGNAAIGVCNPIAPPIVVHHEGDGRC WSEFVLGSAYEGPPRLVHGGVSALVLDHMLGEAASEGLSKARFTGTITVKYLRGTPLGPLRCDAWIDRREGVKVFARGTI SDAAGVTVEADGVFIEPAWARETQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19696; Mature: 19564
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADAVRELVDATIRTEVDDAVVAEARSAIEAVTASLRRRTRPVGVSYRVNGRPLPLGNAA CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC IGVCNPIAPPIVVHHEGDGRCWSEFVLGSAYEGPPRLVHGGVSALVLDHMLGEAASEGLS EECCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH KARFTGTITVKYLRGTPLGPLRCDAWIDRREGVKVFARGTISDAAGVTVEADGVFIEPAW HHEEEEEEEEEEECCCCCCCEEHHHHHCCCCCEEEEEECCCCCCCCCEEECCCEEECCCC ARETQ CCCCC >Mature Secondary Structure ADAVRELVDATIRTEVDDAVVAEARSAIEAVTASLRRRTRPVGVSYRVNGRPLPLGNAA HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC IGVCNPIAPPIVVHHEGDGRCWSEFVLGSAYEGPPRLVHGGVSALVLDHMLGEAASEGLS EECCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH KARFTGTITVKYLRGTPLGPLRCDAWIDRREGVKVFARGTISDAAGVTVEADGVFIEPAW HHEEEEEEEEEEECCCCCCCEEHHHHHCCCCCEEEEEECCCCCCCCCEEECCCEEECCCC ARETQ CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA